Wall clock time and date at job start Mon Mar 30 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38162 * 120.02887 * 2 1 4 4 C 1.38237 * 120.05901 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.10990 * 0.02562 * 4 3 2 6 6 C 1.38122 * 120.05433 * 359.97438 * 5 4 3 7 7 C 1.38708 * 120.02476 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05850 * 359.97438 * 7 2 1 9 9 S 1.52203 * 113.99859 * 95.73928 * 8 7 2 10 10 O 1.42105 * 104.27462 * 191.47323 * 9 8 7 11 11 O 1.42095 * 104.27577 * 319.32941 * 9 8 7 12 12 C 1.81401 * 104.45139 * 75.40004 * 9 8 7 13 13 C 1.53000 * 109.47092 * 174.22130 * 12 9 8 14 14 C 1.50693 * 109.47079 * 180.02562 * 13 12 9 15 15 H 1.08007 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99918 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99668 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47155 * 90.00132 * 18 16 14 20 20 H 1.48498 * 109.46816 * 210.00198 * 18 16 14 21 21 H 1.48500 * 109.47187 * 329.99739 * 18 16 14 22 22 H 1.08999 * 109.47408 * 267.20607 * 1 2 3 23 23 H 1.08998 * 109.47135 * 27.20699 * 1 2 3 24 24 H 1.09005 * 109.47022 * 147.20781 * 1 2 3 25 25 H 1.08005 * 119.97097 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.94847 * 180.02562 * 4 3 2 27 27 H 1.08006 * 119.97397 * 180.27915 * 5 4 3 28 28 H 1.08005 * 120.02596 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46909 * 294.22234 * 12 9 8 30 30 H 1.09006 * 109.46874 * 54.22434 * 12 9 8 31 31 H 1.09008 * 109.46739 * 300.00154 * 13 12 9 32 32 H 1.08995 * 109.46835 * 59.99932 * 13 12 9 33 33 H 0.97006 * 119.99872 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5886 -1.1975 0.0005 7 6 2.2011 -1.2010 0.0005 8 8 1.5233 -2.3789 0.0016 9 16 1.3346 -2.9857 -1.3814 10 8 0.3925 -4.0304 -1.1801 11 8 1.0296 -1.8745 -2.2130 12 6 2.9618 -3.6681 -1.8023 13 6 2.8663 -4.4383 -3.1208 14 6 4.2179 -5.0057 -3.4701 15 1 5.0609 -4.8338 -2.8172 16 6 4.3787 -5.7434 -4.6238 17 7 5.5584 -6.2382 -4.9289 18 14 2.9208 -6.0401 -5.7535 19 1 2.8428 -4.9490 -6.7578 20 1 3.0899 -7.3415 -6.4484 21 1 1.6708 -6.0657 -4.9522 22 1 -0.3634 -0.0501 1.0264 23 1 -0.3633 0.9139 -0.4698 24 1 -0.3633 -0.8639 -0.5566 25 1 1.6584 2.1315 0.0004 26 1 4.1195 2.1330 0.0010 27 1 5.3552 0.0041 0.0055 28 1 4.1314 -2.1313 0.0010 29 1 3.6804 -2.8554 -1.9074 30 1 3.2888 -4.3423 -1.0106 31 1 2.1475 -5.2510 -3.0156 32 1 2.5392 -3.7642 -3.9124 33 1 5.6714 -6.7575 -5.7404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104104519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:27 Heat of formation + Delta-G solvation = -87.665337 kcal Electronic energy + Delta-G solvation = -18869.344127 eV Core-core repulsion = 15794.895535 eV Total energy + Delta-G solvation = -3074.448593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12854 -38.13566 -36.85837 -35.78741 -34.06260 -32.98554 -31.56207 -30.51083 -27.13208 -26.13904 -23.54922 -22.09339 -21.38356 -20.12136 -18.26866 -17.67191 -17.20774 -16.64562 -16.10971 -15.31121 -15.19328 -14.40102 -14.26782 -13.82762 -13.72822 -13.39187 -13.12616 -12.87390 -12.63391 -12.47844 -12.04554 -11.94326 -11.84085 -11.75409 -11.64225 -11.29256 -11.25296 -11.10536 -10.48900 -10.16279 -9.70029 -9.41353 -9.11012 -8.83217 -8.68518 -6.18888 -4.20394 0.28786 1.07663 1.13306 2.38704 3.24989 3.32559 3.36963 3.40400 3.92323 4.26825 4.33996 4.50334 4.56617 4.79698 4.91244 5.03668 5.12784 5.17778 5.41223 5.43128 5.44030 5.50952 5.63313 5.91734 5.99032 6.04934 6.19392 6.21971 6.22806 6.70627 6.75857 6.89773 7.51381 8.33712 8.81559 9.40605 10.93404 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.005935 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.988051 B = 4716.491355 C = 5308.605295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.058 4.058 3 C -0.108 4.108 4 C -0.104 4.104 5 C -0.105 4.105 6 C -0.130 4.130 7 C 0.074 3.926 8 O -0.670 6.670 9 S 2.570 3.430 10 O -0.936 6.936 11 O -0.958 6.958 12 C -0.607 4.607 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.868 3.132 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.261 1.261 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 14.996 11.194 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.150 4.150 7 C 0.033 3.967 8 O -0.628 6.628 9 S 2.670 3.330 10 O -0.934 6.934 11 O -0.956 6.956 12 C -0.738 4.738 13 C -0.043 4.043 14 C -0.559 4.559 15 H 0.096 0.904 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.694 3.306 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.185 1.185 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.163 0.837 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.019 14.951 11.210 19.632 hybrid contribution 0.033 -0.702 -0.768 1.041 sum -5.986 14.249 10.442 18.652 Atomic orbital electron populations 1.20833 0.90174 1.03914 1.02630 1.19987 0.97182 0.91550 0.97349 1.20983 0.94282 0.96913 1.00384 1.21331 0.94196 0.98549 0.98222 1.21049 1.00605 0.91217 0.99475 1.21552 0.91903 1.00894 1.00659 1.17888 0.89836 0.81235 1.07755 1.85726 1.76544 1.41536 1.59039 1.06200 0.78856 0.75098 0.72828 1.93594 1.59036 1.57903 1.82905 1.93598 1.83950 1.50291 1.67800 1.30609 1.20219 1.12274 1.10669 1.19391 1.00953 0.95301 0.88655 1.20831 0.93373 1.33400 1.08321 0.90358 1.24973 0.95811 0.94821 0.97418 1.69877 1.22501 1.35231 1.25643 0.86941 0.83743 0.78378 0.81532 1.19642 1.20670 1.18532 0.90370 0.90413 0.91310 0.84705 0.84960 0.84383 0.83731 0.85251 0.85031 0.94618 0.95374 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.61 36.01 0.35 -1.08 16 2 C -0.06 -0.77 5.41 -104.47 -0.57 -1.33 16 3 C -0.11 -1.10 9.69 -39.61 -0.38 -1.49 16 4 C -0.10 -0.97 10.04 -39.56 -0.40 -1.36 16 5 C -0.11 -1.08 10.04 -39.61 -0.40 -1.48 16 6 C -0.13 -1.65 8.47 -39.43 -0.33 -1.98 16 7 C 0.07 1.09 4.68 -39.22 -0.18 0.91 16 8 O -0.67 -10.83 9.26 -51.75 -0.48 -11.31 16 9 S 2.57 47.39 4.87 -107.50 -0.52 46.86 16 10 O -0.94 -19.86 18.09 -67.04 -1.21 -21.08 16 11 O -0.96 -18.69 15.27 -67.04 -1.02 -19.71 16 12 C -0.61 -11.45 5.02 37.16 0.19 -11.26 16 13 C 0.00 -0.10 4.05 -27.89 -0.11 -0.21 16 14 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 15 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 17 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 18 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 24 H 0.07 0.97 6.17 -51.93 -0.32 0.65 16 25 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 26 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 27 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.14 1.64 6.97 -52.48 -0.37 1.27 16 29 H 0.13 2.19 6.56 -51.93 -0.34 1.85 16 30 H 0.13 2.23 8.14 -51.92 -0.42 1.81 16 31 H 0.04 0.85 7.20 -51.92 -0.37 0.48 16 32 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 291.11 15.07 4.39 4.39 Total: -1.00 -34.21 291.11 -8.93 -43.14 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.91 Total: -0.80 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -2.27 Total: -32.10 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.72 Total: -52.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 47.39 SS G_CDS: -0.52 Total: 46.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.21 -8.93 -43.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.528 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds