Wall clock time and date at job start Mon Mar 30 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38162 * 120.02887 * 2 1 4 4 C 1.38237 * 120.05901 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.10990 * 0.02562 * 4 3 2 6 6 C 1.38122 * 120.05433 * 359.97438 * 5 4 3 7 7 C 1.38708 * 120.02476 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05850 * 359.97438 * 7 2 1 9 9 S 1.52203 * 113.99859 * 95.73928 * 8 7 2 10 10 O 1.42105 * 104.27462 * 191.47323 * 9 8 7 11 11 O 1.42095 * 104.27577 * 319.32941 * 9 8 7 12 12 C 1.81401 * 104.45139 * 75.40004 * 9 8 7 13 13 C 1.53000 * 109.47092 * 174.22130 * 12 9 8 14 14 C 1.50693 * 109.47079 * 180.02562 * 13 12 9 15 15 H 1.08007 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99918 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99668 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47155 * 90.00132 * 18 16 14 20 20 H 1.48498 * 109.46816 * 210.00198 * 18 16 14 21 21 H 1.48500 * 109.47187 * 329.99739 * 18 16 14 22 22 H 1.08999 * 109.47408 * 267.20607 * 1 2 3 23 23 H 1.08998 * 109.47135 * 27.20699 * 1 2 3 24 24 H 1.09005 * 109.47022 * 147.20781 * 1 2 3 25 25 H 1.08005 * 119.97097 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.94847 * 180.02562 * 4 3 2 27 27 H 1.08006 * 119.97397 * 180.27915 * 5 4 3 28 28 H 1.08005 * 120.02596 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46909 * 294.22234 * 12 9 8 30 30 H 1.09006 * 109.46874 * 54.22434 * 12 9 8 31 31 H 1.09008 * 109.46739 * 300.00154 * 13 12 9 32 32 H 1.08995 * 109.46835 * 59.99932 * 13 12 9 33 33 H 0.97006 * 119.99872 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5886 -1.1975 0.0005 7 6 2.2011 -1.2010 0.0005 8 8 1.5233 -2.3789 0.0016 9 16 1.3346 -2.9857 -1.3814 10 8 0.3925 -4.0304 -1.1801 11 8 1.0296 -1.8745 -2.2130 12 6 2.9618 -3.6681 -1.8023 13 6 2.8663 -4.4383 -3.1208 14 6 4.2179 -5.0057 -3.4701 15 1 5.0609 -4.8338 -2.8172 16 6 4.3787 -5.7434 -4.6238 17 7 5.5584 -6.2382 -4.9289 18 14 2.9208 -6.0401 -5.7535 19 1 2.8428 -4.9490 -6.7578 20 1 3.0899 -7.3415 -6.4484 21 1 1.6708 -6.0657 -4.9522 22 1 -0.3634 -0.0501 1.0264 23 1 -0.3633 0.9139 -0.4698 24 1 -0.3633 -0.8639 -0.5566 25 1 1.6584 2.1315 0.0004 26 1 4.1195 2.1330 0.0010 27 1 5.3552 0.0041 0.0055 28 1 4.1314 -2.1313 0.0010 29 1 3.6804 -2.8554 -1.9074 30 1 3.2888 -4.3423 -1.0106 31 1 2.1475 -5.2510 -3.0156 32 1 2.5392 -3.7642 -3.9124 33 1 5.6714 -6.7575 -5.7404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104104519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:27 Heat of formation + Delta-G solvation = -110.949404 kcal Electronic energy + Delta-G solvation = -18870.353800 eV Core-core repulsion = 15794.895535 eV Total energy + Delta-G solvation = -3075.458266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.22062 -39.09843 -38.37344 -37.30882 -35.98557 -33.93878 -33.47459 -31.40965 -28.07990 -27.96247 -24.63217 -23.24787 -22.91260 -21.32443 -19.76473 -19.14693 -18.63375 -18.20162 -17.02970 -16.57757 -16.49991 -16.36006 -15.39299 -15.16241 -14.88377 -14.75732 -14.30433 -14.20765 -13.93669 -13.82078 -13.50874 -13.33106 -13.22170 -13.13500 -13.06960 -12.90048 -12.44681 -12.29570 -12.06471 -11.90743 -11.72417 -11.29340 -10.85640 -9.98430 -9.73733 -8.37865 -6.43852 -1.05908 0.12666 0.24933 1.10342 1.31013 1.33475 1.43463 2.28554 2.47243 2.56708 2.89970 2.96001 3.59556 3.71104 3.73919 3.83501 4.05517 4.07984 4.31154 4.35382 4.49374 4.57148 4.67156 4.82408 4.94951 5.00593 5.04305 5.14843 5.20488 5.38363 5.41951 5.43795 5.88836 6.14693 6.61493 7.20502 8.77479 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.005935 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.988051 B = 4716.491355 C = 5308.605295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.108 4.108 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.146 4.146 7 C 0.027 3.973 8 O -0.663 6.663 9 S 2.596 3.404 10 O -0.970 6.970 11 O -0.970 6.970 12 C -0.609 4.609 13 C -0.013 4.013 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.938 5.938 18 Si 0.922 3.078 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.251 1.251 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.040 0.960 25 H 0.168 0.832 26 H 0.172 0.828 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 17.385 11.538 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.126 4.126 4 C -0.110 4.110 5 C -0.127 4.127 6 C -0.166 4.166 7 C -0.014 4.014 8 O -0.622 6.622 9 S 2.696 3.304 10 O -0.969 6.969 11 O -0.969 6.969 12 C -0.739 4.739 13 C -0.052 4.052 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.577 5.577 18 Si 0.744 3.256 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.175 1.175 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.059 0.941 25 H 0.186 0.814 26 H 0.190 0.810 27 H 0.183 0.817 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.387 17.328 11.551 21.783 hybrid contribution 0.262 -1.271 -0.743 1.495 sum -6.125 16.058 10.808 20.302 Atomic orbital electron populations 1.20942 0.89983 1.03834 1.03474 1.20345 0.97838 0.92086 0.97698 1.21439 0.95023 0.97060 0.99040 1.21860 0.94050 0.99731 0.95326 1.21489 1.02075 0.90749 0.98404 1.21800 0.91372 1.02319 1.01118 1.18412 0.90824 0.80959 1.11208 1.85698 1.76870 1.42655 1.56987 1.05389 0.77800 0.74290 0.72913 1.93540 1.60149 1.59360 1.83814 1.93559 1.83942 1.50501 1.68884 1.30567 1.21865 1.12735 1.08694 1.19354 0.98566 0.95892 0.91400 1.21131 0.94527 1.33197 1.07827 0.92944 1.25829 0.98458 0.94759 0.99190 1.69997 1.24626 1.36496 1.26602 0.86069 0.80667 0.78945 0.79879 1.18298 1.19801 1.17456 0.88835 0.88062 0.94071 0.81424 0.81047 0.81742 0.83439 0.83586 0.83639 0.94791 0.94734 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.61 71.24 0.68 -2.16 16 2 C -0.08 -1.89 5.41 -19.77 -0.11 -2.00 16 3 C -0.11 -1.83 9.69 22.25 0.22 -1.61 16 4 C -0.09 -1.31 10.04 22.28 0.22 -1.09 16 5 C -0.11 -1.92 10.04 22.25 0.22 -1.70 16 6 C -0.15 -3.50 8.47 22.37 0.19 -3.31 16 7 C 0.03 0.78 4.68 22.51 0.11 0.88 16 8 O -0.66 -21.45 9.26 -61.50 -0.57 -22.02 16 9 S 2.60 95.70 4.87 -56.49 -0.28 95.42 16 10 O -0.97 -41.59 18.09 -118.57 -2.15 -43.74 16 11 O -0.97 -37.60 15.27 -118.57 -1.81 -39.41 16 12 C -0.61 -22.89 5.02 71.98 0.36 -22.52 16 13 C -0.01 -0.63 4.05 29.85 0.12 -0.51 16 14 C -0.53 -29.76 9.66 25.60 0.25 -29.52 16 15 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 16 C 0.02 0.95 5.47 84.66 0.46 1.42 16 17 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 18 Si 0.92 43.70 27.47 68.60 1.88 45.59 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.10 1.71 8.07 -2.39 -0.02 1.69 16 24 H 0.04 1.15 6.17 -2.38 -0.01 1.13 16 25 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 26 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 27 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 28 H 0.15 3.26 6.97 -2.91 -0.02 3.24 16 29 H 0.15 4.91 6.56 -2.39 -0.02 4.89 16 30 H 0.15 4.95 8.14 -2.39 -0.02 4.93 16 31 H 0.03 1.61 7.20 -2.38 -0.02 1.60 16 32 H 0.03 1.58 7.57 -2.39 -0.02 1.56 16 33 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -74.82 291.11 1.17 -73.65 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.06 Total: 9.63 kcal Atomic # 6 Polarization: -64.86 SS G_CDS: 2.73 Total: -62.13 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.30 Total: -57.00 kcal Atomic # 8 Polarization: -100.64 SS G_CDS: -4.52 Total: -105.17 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Atomic # 16 Polarization: 95.70 SS G_CDS: -0.28 Total: 95.42 kcal Total: -74.82 1.17 -73.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.299 kcal (2) G-P(sol) polarization free energy of solvation -74.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds