Wall clock time and date at job start Mon Mar 30 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47297 * 269.99968 * 3 2 1 5 5 H 1.48505 * 109.46850 * 30.00262 * 3 2 1 6 6 H 1.48498 * 109.47225 * 150.00002 * 3 2 1 7 7 C 1.37883 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46989 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.46669 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54112 * 68.37809 * 12 11 10 14 14 O 1.42094 * 110.54751 * 291.62348 * 12 11 10 15 15 C 1.76206 * 104.44818 * 179.97438 * 12 11 10 16 16 C 1.38269 * 119.94243 * 90.00242 * 15 12 11 17 17 C 1.38137 * 120.06013 * 180.02562 * 16 15 12 18 18 C 1.38737 * 119.94162 * 359.97438 * 17 16 15 19 19 O 1.35896 * 120.05545 * 180.02562 * 18 17 16 20 20 C 1.38734 * 119.88732 * 0.27760 * 18 17 16 21 21 C 1.38140 * 119.94299 * 359.46795 * 20 18 17 22 22 H 0.97002 * 120.00215 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47474 * 59.99922 * 9 7 2 24 24 H 1.08998 * 109.47353 * 300.00100 * 9 7 2 25 25 H 1.08995 * 109.47180 * 59.99981 * 10 9 7 26 26 H 1.08998 * 109.46877 * 300.00157 * 10 9 7 27 27 H 1.09004 * 109.47120 * 60.00201 * 11 10 9 28 28 H 1.08998 * 109.47341 * 299.99752 * 11 10 9 29 29 H 1.08008 * 119.96973 * 0.02562 * 16 15 12 30 30 H 1.07997 * 120.03660 * 179.97438 * 17 16 15 31 31 H 0.96700 * 114.00170 * 90.00174 * 19 18 17 32 32 H 1.07999 * 120.02623 * 179.72382 * 20 18 17 33 33 H 1.08003 * 119.97390 * 180.23377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6591 -6.3658 -0.0019 13 8 3.3558 -6.4268 1.2350 14 8 3.3558 -6.4256 -1.2389 15 6 1.6479 -7.8089 -0.0019 16 6 1.2514 -8.3738 -1.2000 17 6 0.4582 -9.5048 -1.2028 18 6 0.0598 -10.0741 -0.0020 19 8 -0.7201 -11.1870 -0.0020 20 6 0.4546 -9.5023 1.1988 21 6 1.2522 -8.3744 1.1962 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6043 -0.8905 27 1 0.8539 -5.0445 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 1.5621 -7.9304 -2.1346 30 1 0.1484 -9.9455 -2.1388 31 1 -0.2224 -12.0161 -0.0023 32 1 0.1421 -9.9411 2.1349 33 1 1.5629 -7.9311 2.1307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105724004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:10 Heat of formation + Delta-G solvation = -101.535058 kcal Electronic energy + Delta-G solvation = -17774.962975 eV Core-core repulsion = 14699.912946 eV Total energy + Delta-G solvation = -3075.050029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02138 -37.12392 -36.92289 -35.75436 -34.69783 -32.20478 -31.39824 -30.36128 -27.82774 -23.86951 -23.23995 -23.14700 -20.59018 -18.99193 -18.89279 -17.62838 -16.58374 -16.40771 -15.82483 -15.62685 -15.39301 -14.81300 -14.48795 -14.23340 -13.83769 -13.40404 -12.83985 -12.58377 -12.53356 -12.28176 -11.94821 -11.84185 -11.78570 -11.29286 -10.92786 -10.91309 -10.87244 -10.86063 -10.39319 -9.96545 -9.49548 -9.39569 -9.30697 -9.10058 -8.41314 -6.06198 -4.09407 0.15820 0.53513 0.96959 2.93800 3.11820 3.30568 3.36786 3.40738 3.71757 4.01701 4.20082 4.42274 4.56358 4.58444 4.97153 5.02081 5.12851 5.29277 5.30713 5.31677 5.61461 5.66401 5.83308 5.84798 5.95938 6.25082 6.36243 6.41976 6.84521 7.15876 7.56102 7.65476 7.91662 8.31672 8.96871 9.55419 11.04979 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.003703 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.022358 B = 7558.621935 C = 7862.945147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.108 4.108 11 C -0.583 4.583 12 S 2.484 3.516 13 O -0.942 6.942 14 O -0.942 6.942 15 C -0.667 4.667 16 C -0.007 4.007 17 C -0.168 4.168 18 C 0.154 3.846 19 O -0.499 6.499 20 C -0.168 4.168 21 C -0.007 4.007 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.397 0.603 32 H 0.138 0.862 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -21.055 -0.001 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.147 4.147 11 C -0.716 4.716 12 S 2.666 3.334 13 O -0.939 6.939 14 O -0.939 6.939 15 C -0.752 4.752 16 C -0.026 4.026 17 C -0.188 4.188 18 C 0.110 3.890 19 O -0.311 6.311 20 C -0.187 4.187 21 C -0.026 4.026 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.254 0.746 32 H 0.156 0.844 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.087 -20.603 0.004 20.603 hybrid contribution -0.300 0.244 -0.011 0.388 sum -0.214 -20.359 -0.007 20.360 Atomic orbital electron populations 1.69953 1.06099 1.26809 1.50538 1.25020 0.94883 0.99381 0.95085 0.86551 0.79881 0.83158 0.78194 1.20566 1.21192 1.19717 1.21247 0.93279 0.90832 1.51136 0.92303 1.19080 0.93539 0.90359 0.97875 1.21577 0.99498 0.91373 1.02287 1.30282 1.15449 1.14035 1.11787 1.05939 0.76789 0.75913 0.74722 1.93542 1.69800 1.86158 1.44444 1.93541 1.69787 1.86165 1.44446 1.30902 1.21420 1.23760 0.99157 1.20912 0.91342 0.93140 0.97182 1.21550 1.00326 0.98640 0.98237 1.18757 0.89170 0.88531 0.92585 1.84785 1.34542 1.15216 1.96533 1.21547 1.00276 0.98684 0.98233 1.20910 0.91323 0.93147 0.97184 0.92877 0.96004 0.96005 0.91299 0.91313 0.84969 0.84960 0.83470 0.84440 0.74555 0.84438 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.58 -8.64 5.98 37.16 0.22 -8.42 16 12 S 2.48 35.69 5.16 -107.50 -0.55 35.14 16 13 O -0.94 -15.81 17.12 -57.54 -0.98 -16.79 16 14 O -0.94 -15.80 17.12 -57.54 -0.99 -16.79 16 15 C -0.67 -8.18 5.66 -39.56 -0.22 -8.40 16 16 C -0.01 -0.08 9.46 -39.61 -0.37 -0.45 16 17 C -0.17 -1.65 9.99 -39.43 -0.39 -2.05 16 18 C 0.15 1.50 6.71 -39.21 -0.26 1.24 16 19 O -0.50 -3.96 13.50 -19.41 -0.26 -4.23 16 20 C -0.17 -1.65 9.99 -39.43 -0.39 -2.05 16 21 C -0.01 -0.08 9.46 -39.61 -0.37 -0.45 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 28 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.15 1.45 7.57 -52.48 -0.40 1.06 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.40 1.11 9.06 45.56 0.41 1.52 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.15 1.45 7.57 -52.48 -0.40 1.06 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -35.68 304.21 -8.28 -43.96 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.30 Total: -0.94 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: -2.49 Total: -35.67 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.23 Total: -37.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 35.69 SS G_CDS: -0.55 Total: 35.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.68 -8.28 -43.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105724004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.576 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds