Wall clock time and date at job start Mon Mar 30 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47297 * 269.99968 * 3 2 1 5 5 H 1.48505 * 109.46850 * 30.00262 * 3 2 1 6 6 H 1.48498 * 109.47225 * 150.00002 * 3 2 1 7 7 C 1.37883 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46989 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.46669 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54112 * 68.37809 * 12 11 10 14 14 O 1.42094 * 110.54751 * 291.62348 * 12 11 10 15 15 C 1.76206 * 104.44818 * 179.97438 * 12 11 10 16 16 C 1.38269 * 119.94243 * 90.00242 * 15 12 11 17 17 C 1.38137 * 120.06013 * 180.02562 * 16 15 12 18 18 C 1.38737 * 119.94162 * 359.97438 * 17 16 15 19 19 O 1.35896 * 120.05545 * 180.02562 * 18 17 16 20 20 C 1.38734 * 119.88732 * 0.27760 * 18 17 16 21 21 C 1.38140 * 119.94299 * 359.46795 * 20 18 17 22 22 H 0.97002 * 120.00215 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47474 * 59.99922 * 9 7 2 24 24 H 1.08998 * 109.47353 * 300.00100 * 9 7 2 25 25 H 1.08995 * 109.47180 * 59.99981 * 10 9 7 26 26 H 1.08998 * 109.46877 * 300.00157 * 10 9 7 27 27 H 1.09004 * 109.47120 * 60.00201 * 11 10 9 28 28 H 1.08998 * 109.47341 * 299.99752 * 11 10 9 29 29 H 1.08008 * 119.96973 * 0.02562 * 16 15 12 30 30 H 1.07997 * 120.03660 * 179.97438 * 17 16 15 31 31 H 0.96700 * 114.00170 * 90.00174 * 19 18 17 32 32 H 1.07999 * 120.02623 * 179.72382 * 20 18 17 33 33 H 1.08003 * 119.97390 * 180.23377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6591 -6.3658 -0.0019 13 8 3.3558 -6.4268 1.2350 14 8 3.3558 -6.4256 -1.2389 15 6 1.6479 -7.8089 -0.0019 16 6 1.2514 -8.3738 -1.2000 17 6 0.4582 -9.5048 -1.2028 18 6 0.0598 -10.0741 -0.0020 19 8 -0.7201 -11.1870 -0.0020 20 6 0.4546 -9.5023 1.1988 21 6 1.2522 -8.3744 1.1962 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6043 -0.8905 27 1 0.8539 -5.0445 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 1.5621 -7.9304 -2.1346 30 1 0.1484 -9.9455 -2.1388 31 1 -0.2224 -12.0161 -0.0023 32 1 0.1421 -9.9411 2.1349 33 1 1.5629 -7.9311 2.1307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105724004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:10 Heat of formation + Delta-G solvation = -128.288264 kcal Electronic energy + Delta-G solvation = -17776.123081 eV Core-core repulsion = 14699.912946 eV Total energy + Delta-G solvation = -3076.210135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75219 -38.16766 -37.82065 -37.00399 -36.45454 -34.15622 -32.16906 -31.16411 -29.63808 -25.64358 -24.09377 -24.01395 -22.27886 -20.09088 -19.57124 -18.74647 -18.48196 -17.38898 -17.05658 -16.51871 -16.48374 -16.44072 -15.64628 -15.58744 -14.58498 -14.49300 -14.26760 -14.11564 -13.53940 -13.52123 -13.25163 -13.13917 -13.06588 -12.96702 -12.74640 -12.61753 -12.16091 -11.91344 -11.72564 -11.59038 -11.35136 -10.99728 -10.56039 -10.17329 -10.11575 -8.21358 -6.32192 -0.95770 -0.31986 0.19723 1.41762 1.42355 1.53770 1.92877 2.25915 2.41400 2.87725 3.09449 3.12391 3.14479 3.72714 3.77221 3.87917 3.94746 4.22279 4.37704 4.41456 4.59070 4.68830 4.87921 4.93792 4.95991 5.02574 5.08301 5.21497 5.47606 5.64261 5.64929 5.81220 6.21039 6.71111 6.83782 7.37159 8.90137 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.003703 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.022358 B = 7558.621935 C = 7862.945147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.109 4.109 11 C -0.586 4.586 12 S 2.510 3.490 13 O -0.969 6.969 14 O -0.969 6.969 15 C -0.675 4.675 16 C -0.018 4.018 17 C -0.171 4.171 18 C 0.162 3.838 19 O -0.504 6.504 20 C -0.171 4.171 21 C -0.018 4.018 22 H 0.265 0.735 23 H 0.004 0.996 24 H 0.004 0.996 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.421 0.579 32 H 0.160 0.840 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -22.406 -0.011 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.148 4.148 11 C -0.716 4.716 12 S 2.695 3.305 13 O -0.967 6.967 14 O -0.966 6.966 15 C -0.764 4.764 16 C -0.037 4.037 17 C -0.191 4.191 18 C 0.117 3.883 19 O -0.319 6.319 20 C -0.190 4.190 21 C -0.037 4.037 22 H 0.073 0.927 23 H 0.023 0.977 24 H 0.022 0.978 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.283 0.717 32 H 0.178 0.822 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.007 -21.940 -0.007 21.940 hybrid contribution -0.357 0.494 -0.008 0.610 sum -0.350 -21.446 -0.016 21.449 Atomic orbital electron populations 1.70069 1.07655 1.27874 1.51444 1.25935 0.95797 1.03241 0.94621 0.85477 0.78723 0.78515 0.78544 1.19741 1.20660 1.18824 1.21750 0.93805 0.92459 1.50947 0.92020 1.18984 0.94075 0.91792 0.96075 1.21384 0.98760 0.92100 1.02539 1.30233 1.15724 1.12016 1.13676 1.04808 0.76319 0.75968 0.73411 1.93500 1.70949 1.86733 1.45471 1.93499 1.70934 1.86739 1.45468 1.30381 1.22659 1.22969 1.00379 1.21121 0.91722 0.93806 0.97074 1.21808 0.99727 0.98056 0.99465 1.18869 0.88104 0.88878 0.92448 1.84730 1.34872 1.15918 1.96419 1.21805 0.99679 0.98101 0.99461 1.21118 0.91708 0.93811 0.97076 0.92664 0.97747 0.97752 0.91149 0.91139 0.83225 0.83222 0.82742 0.82220 0.71745 0.82224 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.14 9.11 25.60 0.23 -30.91 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.11 -4.33 5.16 30.59 0.16 -4.17 16 11 C -0.59 -17.17 5.98 71.98 0.43 -16.74 16 12 S 2.51 71.24 5.16 -56.49 -0.29 70.95 16 13 O -0.97 -32.38 17.12 -127.65 -2.19 -34.57 16 14 O -0.97 -32.36 17.12 -127.65 -2.19 -34.55 16 15 C -0.68 -15.75 5.66 22.28 0.13 -15.62 16 16 C -0.02 -0.38 9.46 22.25 0.21 -0.17 16 17 C -0.17 -2.93 9.99 22.37 0.22 -2.71 16 18 C 0.16 2.68 6.71 22.51 0.15 2.83 16 19 O -0.50 -6.30 13.50 -92.38 -1.25 -7.54 16 20 C -0.17 -2.93 9.99 22.37 0.22 -2.71 16 21 C -0.02 -0.38 9.46 22.25 0.21 -0.17 16 22 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 23 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.15 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.15 3.82 8.14 -2.39 -0.02 3.80 16 29 H 0.15 2.86 7.57 -2.91 -0.02 2.84 16 30 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.42 0.84 9.06 -74.06 -0.67 0.17 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.15 2.86 7.57 -2.91 -0.02 2.84 16 Total: -1.00 -76.19 304.21 -0.57 -76.76 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.45 Total: 6.46 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 2.58 Total: -68.14 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.28 Total: -55.40 kcal Atomic # 8 Polarization: -71.04 SS G_CDS: -5.62 Total: -76.66 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 71.24 SS G_CDS: -0.29 Total: 70.95 kcal Total: -76.19 -0.57 -76.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105724004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.529 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds