Wall clock time and date at job start Mon Mar 30 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38270 * 119.94421 * 2 1 4 4 C 1.38138 * 120.05794 * 180.26220 * 3 2 1 5 5 C 1.38736 * 119.94337 * 359.46080 * 4 3 2 6 6 O 1.35893 * 120.05957 * 180.30421 * 5 4 3 7 7 S 1.52198 * 114.00229 * 89.99821 * 6 5 4 8 8 O 1.42099 * 104.27858 * 191.07298 * 7 6 5 9 9 O 1.42096 * 104.27963 * 318.93324 * 7 6 5 10 10 C 1.81407 * 104.44804 * 75.00228 * 7 6 5 11 11 C 1.53000 * 109.47034 * 180.02562 * 10 7 6 12 12 C 1.50696 * 109.46610 * 180.02562 * 11 10 7 13 13 H 1.08003 * 120.00706 * 0.02562 * 12 11 10 14 14 C 1.37886 * 119.99920 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99750 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00104 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47339 * 90.00268 * 16 14 12 18 18 H 1.48508 * 109.46821 * 210.00062 * 16 14 12 19 19 H 1.48497 * 109.47369 * 329.99615 * 16 14 12 20 20 C 1.38740 * 119.88595 * 0.28279 * 5 4 3 21 21 C 1.38146 * 119.94197 * 359.97438 * 20 5 4 22 22 H 1.08998 * 109.47227 * 270.25304 * 1 2 3 23 23 H 1.08999 * 109.47575 * 30.25213 * 1 2 3 24 24 H 1.09002 * 109.47295 * 150.25537 * 1 2 3 25 25 H 1.08004 * 119.97397 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.03311 * 179.74549 * 4 3 2 27 27 H 1.09004 * 109.46870 * 300.00322 * 10 7 6 28 28 H 1.09001 * 109.46704 * 60.00031 * 10 7 6 29 29 H 1.09004 * 109.46888 * 299.99715 * 11 10 7 30 30 H 1.08995 * 109.47097 * 60.00218 * 11 10 7 31 31 H 0.96995 * 120.00045 * 180.02562 * 15 14 12 32 32 H 1.07993 * 120.02463 * 180.02562 * 20 5 4 33 33 H 1.08006 * 119.96944 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5785 1.2009 -0.0055 5 6 4.2734 0.0001 0.0003 6 8 5.6324 0.0001 0.0012 7 16 6.2506 0.0063 1.3920 8 8 7.6279 0.2698 1.1621 9 8 5.4442 0.9143 2.1299 10 6 6.0190 -1.6878 1.9979 11 6 6.6058 -1.8107 3.4055 12 6 6.4139 -3.2182 3.9084 13 1 5.9230 -3.9519 3.2863 14 6 6.8661 -3.5698 5.1627 15 7 7.4644 -2.6766 5.9202 16 14 6.6289 -5.3147 5.7859 17 1 7.8023 -6.1407 5.4035 18 1 6.4961 -5.2982 7.2649 19 1 5.3999 -5.8922 5.1850 20 6 3.5786 -1.2007 0.0057 21 6 2.1971 -1.1980 0.0058 22 1 -0.3633 0.0045 1.0276 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3634 -0.8923 -0.5099 25 1 1.6558 2.1327 0.0004 26 1 4.1172 2.1370 -0.0096 27 1 4.9546 -1.9210 2.0266 28 1 6.5257 -2.3848 1.3304 29 1 7.6702 -1.5773 3.3770 30 1 6.0987 -1.1138 4.0726 31 1 7.7829 -2.9239 6.8024 32 1 4.1172 -2.1367 0.0107 33 1 1.6557 -2.1326 0.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:28 Heat of formation + Delta-G solvation = -117.578317 kcal Electronic energy + Delta-G solvation = -18521.270216 eV Core-core repulsion = 15445.524499 eV Total energy + Delta-G solvation = -3075.745717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.08985 -39.32421 -38.35490 -37.26671 -35.95224 -33.33644 -33.07284 -32.12207 -27.70664 -27.69600 -24.29835 -23.81867 -23.08304 -21.36131 -19.59221 -19.00310 -18.52003 -18.04150 -16.87312 -16.61525 -16.52146 -16.30838 -15.30617 -15.03873 -14.65747 -14.60026 -14.51161 -14.27195 -13.98531 -13.77943 -13.39646 -13.31847 -12.96211 -12.87911 -12.83659 -12.72787 -12.59987 -12.29232 -12.14865 -11.95869 -11.75107 -11.13802 -10.65012 -10.09513 -9.66665 -8.26242 -6.40493 -1.03193 0.10799 0.25904 1.15026 1.41787 1.43726 1.54750 2.37568 2.52607 2.55674 2.93577 3.07603 3.66658 3.75492 3.83319 3.93102 3.95274 4.13686 4.28799 4.32333 4.66505 4.75719 4.89730 4.92404 4.98862 5.15542 5.21976 5.22282 5.25518 5.30851 5.52619 5.67216 5.87099 6.04156 6.72486 7.29732 8.86272 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.005606 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.108480 B = 4993.599225 C = 5927.541552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 C -0.110 4.110 4 C -0.109 4.109 5 C 0.021 3.979 6 O -0.665 6.665 7 S 2.598 3.402 8 O -0.977 6.977 9 O -0.981 6.981 10 C -0.606 4.606 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.976 3.024 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.256 1.256 20 C -0.132 4.132 21 C -0.106 4.106 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.268 0.732 32 H 0.156 0.844 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 2.869 -13.932 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.020 4.020 6 O -0.625 6.625 7 S 2.699 3.301 8 O -0.975 6.975 9 O -0.979 6.979 10 C -0.736 4.736 11 C -0.015 4.015 12 C -0.578 4.578 13 H 0.096 0.904 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.179 1.179 20 C -0.152 4.152 21 C -0.124 4.124 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.182 0.818 26 H 0.153 0.847 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.574 3.627 -13.999 21.253 hybrid contribution 0.853 -1.007 0.801 1.544 sum -14.721 2.620 -13.198 19.944 Atomic orbital electron populations 1.20940 0.87743 1.04742 1.03778 1.20623 0.98647 0.92453 0.95170 1.21340 0.91814 1.00156 0.99425 1.21547 0.96299 0.96928 0.98151 1.18563 0.75796 0.96591 1.11058 1.85715 1.27781 1.92578 1.56385 1.05296 0.73510 0.78514 0.72817 1.93523 1.35121 1.85379 1.83459 1.93534 1.69173 1.62410 1.72819 1.30562 1.12199 1.21749 1.09083 1.18807 0.95187 0.99212 0.88269 1.21498 1.39028 0.95851 1.01400 0.90373 1.26121 0.94401 1.02577 0.97033 1.70103 1.39832 1.36538 1.10920 0.85289 0.79267 0.78260 0.77291 1.19730 1.20862 1.17929 1.21746 0.96488 0.96836 1.00178 1.21380 0.91965 1.00076 0.98969 0.89826 0.89670 0.89525 0.81838 0.84663 0.83480 0.83379 0.97407 0.97045 0.92360 0.82628 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.01 71.23 0.71 -0.37 16 2 C -0.07 -1.14 5.88 -19.85 -0.12 -1.26 16 3 C -0.11 -2.14 9.69 22.25 0.22 -1.92 16 4 C -0.11 -2.90 9.05 22.37 0.20 -2.70 16 5 C 0.02 0.63 4.80 22.51 0.11 0.74 16 6 O -0.67 -22.56 10.05 -61.44 -0.62 -23.18 16 7 S 2.60 103.31 5.17 -56.49 -0.29 103.01 16 8 O -0.98 -45.42 18.09 -118.57 -2.15 -47.57 16 9 O -0.98 -42.27 16.26 -118.57 -1.93 -44.20 16 10 C -0.61 -23.78 5.40 71.98 0.39 -23.39 16 11 C 0.02 1.26 4.98 29.85 0.15 1.41 16 12 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 13 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 14 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 15 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 16 Si 0.98 42.82 29.54 68.60 2.03 44.85 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 C -0.13 -3.16 8.46 22.37 0.19 -2.97 16 21 C -0.11 -1.93 9.69 22.25 0.22 -1.72 16 22 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 24 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 25 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 26 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 27 H 0.15 4.98 6.60 -2.39 -0.02 4.96 16 28 H 0.15 5.08 8.14 -2.39 -0.02 5.06 16 29 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 30 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.16 3.15 7.49 -2.91 -0.02 3.13 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -76.38 299.31 1.19 -75.18 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.10 Total: 9.66 kcal Atomic # 6 Polarization: -64.09 SS G_CDS: 2.76 Total: -61.33 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.28 Total: -56.44 kcal Atomic # 8 Polarization: -110.25 SS G_CDS: -4.69 Total: -114.94 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 103.31 SS G_CDS: -0.29 Total: 103.01 kcal Total: -76.38 1.19 -75.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.394 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds