Wall clock time and date at job start Mon Mar 30 2020 01:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 S 1.52197 * 113.99927 * 270.02855 * 7 6 5 9 9 O 1.42105 * 104.27639 * 191.07348 * 8 7 6 10 10 O 1.42108 * 104.27813 * 318.92533 * 8 7 6 11 11 C 1.81396 * 104.45413 * 74.99818 * 8 7 6 12 12 C 1.53002 * 109.47355 * 179.97438 * 11 8 7 13 13 C 1.50704 * 109.46792 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00257 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99473 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00085 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46949 * 60.00377 * 17 15 13 19 19 H 1.48499 * 109.47164 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47589 * 300.00703 * 17 15 13 21 21 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 25 25 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 27 27 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 28 28 H 1.08997 * 109.47222 * 300.00415 * 11 8 7 29 29 H 1.09000 * 109.46892 * 59.99698 * 11 8 7 30 30 H 1.09001 * 109.46966 * 299.99802 * 12 11 8 31 31 H 1.08994 * 109.46885 * 59.99919 * 12 11 8 32 32 H 0.97002 * 119.99915 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.03255 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 16 4.5760 -2.9001 -1.4053 9 8 5.0374 -4.2256 -1.1827 10 8 3.3890 -2.6524 -2.1463 11 6 5.9282 -1.8465 -1.9984 12 6 6.3352 -2.2837 -3.4070 13 6 7.4582 -1.4078 -3.8999 14 1 7.8433 -0.6186 -3.2712 15 6 7.9946 -1.6148 -5.1531 16 7 7.5260 -2.5761 -5.9184 17 14 9.3861 -0.5287 -5.7644 18 1 10.5501 -0.6544 -4.8507 19 1 9.7813 -0.9532 -7.1315 20 1 8.9329 0.8850 -5.7971 21 6 2.1970 -1.1966 -0.0058 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6565 2.1324 -0.0004 26 1 4.1176 2.1381 0.0098 27 1 5.3552 0.0102 0.0002 28 1 5.5966 -0.8084 -2.0213 29 1 6.7826 -1.9402 -1.3281 30 1 6.6670 -3.3217 -3.3835 31 1 5.4810 -2.1903 -4.0774 32 1 7.9031 -2.7215 -6.8002 33 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:30 Heat of formation + Delta-G solvation = -94.190303 kcal Electronic energy + Delta-G solvation = -18562.506566 eV Core-core repulsion = 15487.775030 eV Total energy + Delta-G solvation = -3074.731536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94243 -38.28940 -36.72178 -35.63142 -33.96842 -32.85320 -31.22031 -30.48186 -27.23759 -25.67477 -23.54826 -22.39780 -21.43821 -19.95061 -17.95566 -17.41899 -17.00656 -16.47094 -16.33209 -15.27821 -14.94970 -14.58410 -14.20551 -13.91884 -13.49246 -13.36210 -13.20812 -12.67453 -12.52173 -12.27521 -11.93146 -11.81360 -11.73505 -11.70485 -11.58592 -11.12318 -11.08419 -10.99436 -10.45635 -10.41150 -9.75841 -9.26491 -9.01890 -8.83962 -8.51442 -6.13751 -4.19589 0.38935 1.10368 1.21994 2.50430 3.26267 3.31181 3.32848 3.43192 4.07562 4.35259 4.37235 4.56748 4.64122 4.80794 4.97834 5.04897 5.20701 5.21595 5.39712 5.41819 5.55062 5.60557 5.65686 5.86484 6.02395 6.07421 6.18289 6.32982 6.42314 6.75266 7.26728 7.33012 7.78574 8.15123 8.83116 9.45109 10.97298 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.005359 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.242575 B = 5223.999327 C = 5845.348221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.073 4.073 3 C -0.110 4.110 4 C -0.098 4.098 5 C -0.135 4.135 6 C 0.081 3.919 7 O -0.675 6.675 8 S 2.574 3.426 9 O -0.937 6.937 10 O -0.959 6.959 11 C -0.612 4.612 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.095 4.095 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 8.084 13.001 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.155 4.155 6 C 0.040 3.960 7 O -0.634 6.634 8 S 2.674 3.326 9 O -0.936 6.936 10 O -0.958 6.958 11 C -0.743 4.743 12 C -0.008 4.008 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.115 4.115 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.535 7.318 13.049 18.892 hybrid contribution 1.480 0.748 -0.570 1.753 sum -10.055 8.066 12.479 17.942 Atomic orbital electron populations 1.20827 0.90240 1.03541 1.02570 1.19807 0.96644 0.92102 0.98763 1.21223 0.94284 0.97834 0.99530 1.21026 0.94181 0.97485 0.98877 1.21449 1.01459 0.91140 1.01427 1.18024 0.90483 0.81125 1.06408 1.85752 1.75663 1.43112 1.58861 1.06077 0.77319 0.76430 0.72727 1.93584 1.83185 1.34229 1.82559 1.93589 1.44816 1.85944 1.71432 1.30714 1.16720 1.14582 1.12270 1.18946 0.98559 0.98197 0.85050 1.20952 1.17678 1.16567 1.00893 0.92060 1.25061 0.97215 0.95477 0.96653 1.69942 1.41959 1.30760 1.10144 0.86518 0.82075 0.80615 0.77985 1.20062 1.21048 1.20084 1.21175 0.92025 0.99529 0.98792 0.90837 0.90997 0.90916 0.85057 0.84425 0.83938 0.85908 0.85630 0.94688 0.94662 0.92435 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.07 -0.81 5.88 -104.64 -0.62 -1.43 16 3 C -0.11 -1.09 9.70 -39.56 -0.38 -1.47 16 4 C -0.10 -1.02 10.04 -39.61 -0.40 -1.42 16 5 C -0.13 -1.73 8.46 -39.44 -0.33 -2.06 16 6 C 0.08 1.23 4.80 -39.22 -0.19 1.04 16 7 O -0.68 -11.38 10.05 -51.78 -0.52 -11.90 16 8 S 2.57 50.00 5.17 -107.50 -0.56 49.44 16 9 O -0.94 -20.99 18.09 -67.04 -1.21 -22.20 16 10 O -0.96 -20.10 16.26 -67.04 -1.09 -21.19 16 11 C -0.61 -12.05 5.40 37.16 0.20 -11.85 16 12 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.10 -1.32 8.70 -39.43 -0.34 -1.66 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 24 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 27 H 0.14 1.59 7.50 -52.48 -0.39 1.20 16 28 H 0.12 2.15 6.60 -51.93 -0.34 1.81 16 29 H 0.13 2.21 8.14 -51.92 -0.42 1.79 16 30 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 299.31 15.07 4.51 4.51 Total: -1.00 -34.52 299.31 -9.48 -44.00 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.08 Total: -1.19 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: -2.25 Total: -31.88 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -2.82 Total: -55.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 50.00 SS G_CDS: -0.56 Total: 49.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.52 -9.48 -44.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.188 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds