Wall clock time and date at job start Mon Mar 30 2020 01:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 S 1.52197 * 113.99927 * 270.02855 * 7 6 5 9 9 O 1.42105 * 104.27639 * 191.07348 * 8 7 6 10 10 O 1.42108 * 104.27813 * 318.92533 * 8 7 6 11 11 C 1.81396 * 104.45413 * 74.99818 * 8 7 6 12 12 C 1.53002 * 109.47355 * 179.97438 * 11 8 7 13 13 C 1.50704 * 109.46792 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00257 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99473 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00085 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46949 * 60.00377 * 17 15 13 19 19 H 1.48499 * 109.47164 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47589 * 300.00703 * 17 15 13 21 21 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 25 25 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 27 27 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 28 28 H 1.08997 * 109.47222 * 300.00415 * 11 8 7 29 29 H 1.09000 * 109.46892 * 59.99698 * 11 8 7 30 30 H 1.09001 * 109.46966 * 299.99802 * 12 11 8 31 31 H 1.08994 * 109.46885 * 59.99919 * 12 11 8 32 32 H 0.97002 * 119.99915 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.03255 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 16 4.5760 -2.9001 -1.4053 9 8 5.0374 -4.2256 -1.1827 10 8 3.3890 -2.6524 -2.1463 11 6 5.9282 -1.8465 -1.9984 12 6 6.3352 -2.2837 -3.4070 13 6 7.4582 -1.4078 -3.8999 14 1 7.8433 -0.6186 -3.2712 15 6 7.9946 -1.6148 -5.1531 16 7 7.5260 -2.5761 -5.9184 17 14 9.3861 -0.5287 -5.7644 18 1 10.5501 -0.6544 -4.8507 19 1 9.7813 -0.9532 -7.1315 20 1 8.9329 0.8850 -5.7971 21 6 2.1970 -1.1966 -0.0058 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6565 2.1324 -0.0004 26 1 4.1176 2.1381 0.0098 27 1 5.3552 0.0102 0.0002 28 1 5.5966 -0.8084 -2.0213 29 1 6.7826 -1.9402 -1.3281 30 1 6.6670 -3.3217 -3.3835 31 1 5.4810 -2.1903 -4.0774 32 1 7.9031 -2.7215 -6.8002 33 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:30 Heat of formation + Delta-G solvation = -117.411541 kcal Electronic energy + Delta-G solvation = -18563.513515 eV Core-core repulsion = 15487.775030 eV Total energy + Delta-G solvation = -3075.738485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.10931 -39.29136 -38.36393 -37.27794 -35.95520 -33.73328 -33.14060 -31.43244 -28.10691 -27.55765 -24.68322 -23.85777 -22.76767 -21.22660 -19.50161 -18.80089 -18.52210 -18.03968 -17.42112 -16.60872 -16.52871 -16.40867 -15.27369 -15.02413 -14.70683 -14.51425 -14.37220 -14.15807 -13.97644 -13.77644 -13.40763 -13.32297 -13.03165 -12.92569 -12.84618 -12.77637 -12.55046 -12.26970 -12.18997 -12.00878 -11.75902 -11.15403 -10.63926 -9.97368 -9.75711 -8.25896 -6.40327 -1.04110 0.12308 0.24599 1.13229 1.41987 1.45554 1.53751 2.37801 2.54036 2.54638 2.92059 3.07836 3.63441 3.75335 3.81623 3.93674 4.04411 4.15281 4.24347 4.34155 4.66431 4.70471 4.83299 4.86872 5.01757 5.14826 5.21740 5.23621 5.26379 5.32561 5.49877 5.67139 5.88082 6.04105 6.72387 7.29908 8.86388 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.005359 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.242575 B = 5223.999327 C = 5845.348221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.099 4.099 4 C -0.095 4.095 5 C -0.146 4.146 6 C 0.034 3.966 7 O -0.666 6.666 8 S 2.597 3.403 9 O -0.976 6.976 10 O -0.981 6.981 11 C -0.605 4.605 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.261 1.261 21 C -0.120 4.120 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.008 0.992 31 H 0.011 0.989 32 H 0.268 0.732 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 11.480 13.976 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.167 4.167 6 C -0.007 4.007 7 O -0.626 6.626 8 S 2.698 3.302 9 O -0.975 6.975 10 O -0.979 6.979 11 C -0.735 4.735 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.097 0.903 15 C -0.201 4.201 16 N -0.574 5.574 17 Si 0.799 3.201 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.185 1.185 21 C -0.141 4.141 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.084 0.916 25 H 0.188 0.812 26 H 0.191 0.809 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.528 10.706 14.032 21.081 hybrid contribution 1.338 -0.207 -0.777 1.561 sum -10.190 10.499 13.255 19.742 Atomic orbital electron populations 1.20920 0.88093 1.04250 1.03924 1.20241 0.98317 0.91609 0.97686 1.21759 0.94400 0.98798 0.96806 1.21526 0.94744 0.97853 0.97183 1.21776 1.02421 0.91063 1.01391 1.18561 0.91290 0.80985 1.09845 1.85719 1.75956 1.44467 1.56445 1.05307 0.76579 0.75544 0.72776 1.93524 1.83666 1.36734 1.83530 1.93540 1.45701 1.86035 1.72638 1.30556 1.17923 1.15986 1.09049 1.18806 0.97556 0.96867 0.88217 1.21467 1.17988 1.17001 1.01420 0.90340 1.26119 1.00115 0.96904 0.96968 1.70098 1.43792 1.32836 1.10656 0.85340 0.78579 0.78919 0.77267 1.18847 1.21055 1.18541 1.21414 0.91953 1.00735 0.99985 0.89056 0.88926 0.91617 0.81154 0.80923 0.82670 0.83384 0.83349 0.97415 0.97069 0.92357 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.08 -1.57 5.88 -19.88 -0.12 -1.69 16 3 C -0.10 -1.57 9.70 22.28 0.22 -1.35 16 4 C -0.10 -1.64 10.04 22.25 0.22 -1.42 16 5 C -0.15 -3.46 8.46 22.36 0.19 -3.27 16 6 C 0.03 1.03 4.80 22.51 0.11 1.14 16 7 O -0.67 -22.80 10.05 -61.61 -0.62 -23.42 16 8 S 2.60 103.81 5.17 -56.49 -0.29 103.51 16 9 O -0.98 -45.58 18.09 -118.57 -2.15 -47.73 16 10 O -0.98 -42.53 16.26 -118.57 -1.93 -44.46 16 11 C -0.60 -23.76 5.40 71.98 0.39 -23.37 16 12 C 0.02 1.27 4.98 29.85 0.15 1.42 16 13 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 14 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 17 Si 0.98 42.76 29.54 68.60 2.03 44.79 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 21 C -0.12 -3.31 8.70 22.37 0.19 -3.11 16 22 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 24 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 25 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 26 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 27 H 0.16 3.11 7.50 -2.91 -0.02 3.09 16 28 H 0.15 5.00 6.60 -2.39 -0.02 4.98 16 29 H 0.15 5.09 8.14 -2.39 -0.02 5.07 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -76.81 299.31 1.19 -75.62 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.10 Total: 9.77 kcal Atomic # 6 Polarization: -64.41 SS G_CDS: 2.76 Total: -61.65 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.28 Total: -56.44 kcal Atomic # 8 Polarization: -110.91 SS G_CDS: -4.69 Total: -115.61 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 103.81 SS G_CDS: -0.29 Total: 103.51 kcal Total: -76.81 1.19 -75.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.793 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds