Wall clock time and date at job start Mon Mar 30 2020 01:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47060 * 350.30635 * 3 2 1 5 5 C 1.36952 * 119.99924 * 85.16957 * 4 3 2 6 6 H 1.07999 * 119.99766 * 165.39453 * 5 4 3 7 7 C 1.38979 * 120.00133 * 345.38942 * 5 4 3 8 8 N 1.31407 * 120.00116 * 359.14471 * 7 5 4 9 9 Si 1.86805 * 119.99944 * 179.14472 * 7 5 4 10 10 H 1.48501 * 109.46757 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47051 * 120.00167 * 9 7 5 12 12 H 1.48501 * 109.46933 * 240.00352 * 9 7 5 13 13 C 1.34773 * 119.99556 * 265.16682 * 4 3 2 14 14 O 1.21683 * 119.99509 * 183.78960 * 13 4 3 15 15 C 1.46990 * 120.00311 * 3.79361 * 13 4 3 16 16 C 1.36134 * 127.14544 * 43.11982 * 15 13 4 17 17 O 1.33826 * 109.83080 * 180.02562 * 16 15 13 18 18 C 1.34915 * 111.35357 * 0.06492 * 17 16 15 19 19 C 1.38966 * 133.10176 * 179.97438 * 18 17 16 20 20 C 1.37848 * 119.97923 * 180.02562 * 19 18 17 21 21 C 1.38682 * 120.64835 * 0.02562 * 20 19 18 22 22 C 1.37851 * 120.20197 * 359.97438 * 21 20 19 23 23 C 1.39100 * 119.62738 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47342 * 230.30494 * 3 2 1 25 25 H 1.09004 * 109.47234 * 110.30215 * 3 2 1 26 26 H 0.97002 * 120.00208 * 179.97438 * 8 7 5 27 27 H 1.07997 * 125.08899 * 0.05916 * 16 15 13 28 28 H 1.08004 * 120.01326 * 0.30104 * 19 18 17 29 29 H 1.07995 * 119.67263 * 180.02562 * 20 19 18 30 30 H 1.08001 * 119.89747 * 180.02562 * 21 20 19 31 31 H 1.08002 * 120.18353 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3606 0.2326 5 6 3.2314 -2.2288 -0.8181 6 1 3.8035 -3.1369 -0.6983 7 6 2.6317 -1.9411 -2.0383 8 7 1.9216 -0.8444 -2.1791 9 14 2.8350 -3.1135 -3.4784 10 1 3.6740 -4.2663 -3.0634 11 1 1.5012 -3.6027 -3.9105 12 1 3.4911 -2.4036 -4.6058 13 6 3.4144 -1.7585 1.4805 14 8 3.8854 -2.8653 1.6648 15 6 3.1917 -0.8556 2.6188 16 6 2.0995 -0.0762 2.8484 17 8 2.2614 0.6082 3.9869 18 6 3.4479 0.3275 4.5644 19 6 4.0661 0.7699 5.7277 20 6 5.3139 0.2935 6.0687 21 6 5.9643 -0.6268 5.2605 22 6 5.3669 -1.0773 4.1027 23 6 4.1075 -0.6039 3.7497 24 1 2.9711 0.6571 0.7907 25 1 2.9712 0.3574 -0.9638 26 1 1.5033 -0.6434 -3.0310 27 1 1.2319 -0.0191 2.2078 28 1 3.5672 1.4835 6.3668 29 1 5.7895 0.6404 6.9741 30 1 6.9416 -0.9923 5.5395 31 1 5.8736 -1.7943 3.4737 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113161862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:44 Heat of formation + Delta-G solvation = 29.785439 kcal Electronic energy + Delta-G solvation = -19856.101666 eV Core-core repulsion = 16683.594921 eV Total energy + Delta-G solvation = -3172.506745 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.58770 -40.55317 -38.80675 -37.74219 -36.24579 -34.28781 -33.35405 -31.34444 -30.49095 -29.25975 -27.13079 -24.55144 -23.81395 -23.18053 -20.77933 -19.94594 -18.91025 -18.34700 -18.07858 -17.37946 -17.09002 -16.75602 -16.22593 -15.86252 -15.35736 -15.26026 -14.80644 -14.72147 -14.49150 -13.88453 -13.61422 -13.42803 -13.23503 -13.12559 -13.02372 -12.79709 -12.45077 -12.32614 -12.11890 -11.90833 -11.24475 -11.15898 -10.72059 -10.13423 -9.63075 -9.22274 -8.43870 -6.09677 -0.19168 0.35954 0.83949 1.38741 1.43584 1.55203 1.60251 1.83393 1.96168 2.20300 2.29586 2.77470 2.94847 2.95954 3.38518 3.52576 3.68135 3.96515 4.07856 4.18764 4.37355 4.41415 4.46436 4.58648 4.81809 4.98274 5.13415 5.29138 5.37269 5.43601 5.53936 5.64428 5.89192 6.09938 6.29548 6.89467 6.97434 7.18513 7.74100 8.52604 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.005903 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.896505 B = 4741.956211 C = 5502.982103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.265 3.735 3 C 0.220 3.780 4 N -0.444 5.444 5 C -0.328 4.328 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.898 5.898 9 Si 0.998 3.002 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.514 3.486 14 O -0.610 6.610 15 C -0.220 4.220 16 C 0.048 3.952 17 O -0.183 6.183 18 C 0.029 3.971 19 C -0.103 4.103 20 C -0.082 4.082 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.124 4.124 24 H 0.110 0.890 25 H 0.143 0.857 26 H 0.278 0.722 27 H 0.207 0.793 28 H 0.164 0.836 29 H 0.182 0.818 30 H 0.161 0.839 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 7.453 11.720 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.052 4.052 3 C 0.094 3.906 4 N -0.162 5.162 5 C -0.455 4.455 6 H 0.108 0.892 7 C -0.198 4.198 8 N -0.539 5.539 9 Si 0.822 3.178 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.187 1.187 13 C 0.305 3.695 14 O -0.497 6.497 15 C -0.224 4.224 16 C -0.020 4.020 17 O -0.083 6.083 18 C -0.017 4.017 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.125 4.125 24 H 0.128 0.872 25 H 0.160 0.840 26 H 0.089 0.911 27 H 0.223 0.777 28 H 0.182 0.818 29 H 0.199 0.801 30 H 0.179 0.821 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.245 7.185 11.728 14.720 hybrid contribution 0.034 -1.010 -1.536 1.839 sum 5.278 6.175 10.192 13.033 Atomic orbital electron populations 1.80945 1.14009 1.09585 1.14006 1.29419 0.95493 0.91497 0.88766 1.19265 0.80807 0.84557 1.06015 1.43677 1.55751 1.11336 1.05452 1.19848 1.32083 1.03976 0.89640 0.89226 1.26001 0.94294 0.98565 1.00901 1.69704 1.32445 1.24796 1.26922 0.84775 0.77802 0.77969 0.77284 1.19571 1.20999 1.18663 1.17401 0.83813 0.86259 0.82054 1.90606 1.50693 1.23460 1.84896 1.21082 0.98112 1.04216 0.99039 1.24403 0.99017 0.91779 0.86797 1.83825 1.34807 1.57179 1.32497 1.20103 0.84864 0.99257 0.97486 1.20438 0.95995 1.02819 0.92891 1.21459 0.92723 0.95297 1.00435 1.21466 1.01491 0.97894 0.93182 1.20736 0.92724 0.99155 0.98132 1.19736 0.97195 1.00845 0.94740 0.87196 0.83990 0.91109 0.77709 0.81845 0.80100 0.82098 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.28 18.48 20.01 0.37 -22.91 16 2 C 0.26 11.59 10.60 89.44 0.95 12.54 16 3 C 0.22 9.06 4.77 84.57 0.40 9.46 16 4 N -0.44 -21.66 2.59 -649.60 -1.68 -23.34 16 5 C -0.33 -17.30 9.46 84.07 0.79 -16.50 16 6 H 0.09 5.05 7.23 -2.91 -0.02 5.03 16 7 C 0.00 0.14 5.35 84.93 0.45 0.59 16 8 N -0.90 -43.42 8.09 21.67 0.18 -43.24 16 9 Si 1.00 40.52 29.55 68.60 2.03 42.55 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 C 0.51 25.45 7.54 86.54 0.65 26.10 16 14 O -0.61 -34.59 16.73 -4.30 -0.07 -34.67 16 15 C -0.22 -9.04 5.20 -18.98 -0.10 -9.14 16 16 C 0.05 1.73 9.91 67.33 0.67 2.40 16 17 O -0.18 -5.91 10.53 -4.07 -0.04 -5.96 16 18 C 0.03 0.89 7.39 22.93 0.17 1.06 16 19 C -0.10 -2.16 10.06 22.35 0.22 -1.93 16 20 C -0.08 -1.37 10.01 22.28 0.22 -1.15 16 21 C -0.12 -2.59 10.04 22.28 0.22 -2.37 16 22 C -0.09 -2.81 10.09 22.39 0.23 -2.59 16 23 C -0.12 -4.45 6.39 -20.09 -0.13 -4.58 16 24 H 0.11 3.78 5.96 -2.39 -0.01 3.77 16 25 H 0.14 5.97 6.29 -2.39 -0.02 5.95 16 26 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 27 H 0.21 7.37 5.25 -2.91 -0.02 7.35 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.11 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -67.01 279.39 6.73 -60.29 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.19 Total: 13.39 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 4.76 Total: 13.89 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -1.14 Total: -89.49 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.11 Total: -40.62 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -67.01 6.73 -60.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113161862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.073 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds