Wall clock time and date at job start Mon Mar 30 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99655 * 2 1 4 4 O 1.20825 * 120.00406 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99831 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47210 * 179.97438 * 5 3 2 7 7 C 1.36956 * 119.99641 * 269.99774 * 6 5 3 8 8 H 1.08004 * 119.99537 * 140.11526 * 7 6 5 9 9 C 1.38975 * 120.00319 * 320.11215 * 7 6 5 10 10 N 1.31411 * 119.99941 * 341.69087 * 9 7 6 11 11 Si 1.86804 * 119.99877 * 161.69639 * 9 7 6 12 12 H 1.48495 * 109.47217 * 59.99737 * 11 9 7 13 13 H 1.48499 * 109.46811 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47199 * 299.99701 * 11 9 7 15 15 C 1.34778 * 120.00110 * 90.00111 * 6 5 3 16 16 O 1.21659 * 119.99481 * 354.64561 * 15 6 5 17 17 C 1.47172 * 119.99868 * 174.91970 * 15 6 5 18 18 C 1.35295 * 123.15255 * 173.65847 * 17 15 6 19 19 S 1.70934 * 108.82356 * 179.87294 * 18 17 15 20 20 C 1.70767 * 91.13673 * 0.33159 * 19 18 17 21 21 N 1.28647 * 110.57632 * 359.80567 * 20 19 18 22 22 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47238 * 300.00288 * 1 2 3 24 24 H 1.09005 * 109.46810 * 60.00353 * 1 2 3 25 25 H 1.09007 * 109.47364 * 59.99900 * 5 3 2 26 26 H 1.08998 * 109.47054 * 299.99859 * 5 3 2 27 27 H 0.96996 * 119.99701 * 185.01991 * 10 9 7 28 28 H 1.08006 * 125.58422 * 359.97438 * 18 17 15 29 29 H 1.08004 * 124.71381 * 179.82549 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1763 3.3356 -1.1866 8 1 3.8539 4.3606 -1.2962 9 6 4.7887 2.6823 -2.2494 10 7 5.4951 1.5954 -2.0335 11 14 4.6078 3.3493 -3.9849 12 1 5.1582 4.7271 -4.0456 13 1 5.3510 2.4778 -4.9301 14 1 3.1708 3.3734 -4.3587 15 6 4.1722 3.3268 1.1667 16 8 3.9062 2.7758 2.2182 17 6 4.6965 4.7020 1.1685 18 6 4.7956 5.4546 2.2884 19 16 5.4503 6.9780 1.8730 20 6 5.5450 6.5269 0.2287 21 7 5.1137 5.3262 0.0637 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9564 0.7806 -0.8892 26 1 3.9556 0.7810 0.8908 27 1 5.9820 1.1808 -2.7627 28 1 4.5095 5.1432 3.2822 29 1 5.9157 7.1615 -0.5628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120504294.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:34 Heat of formation + Delta-G solvation = -49.423872 kcal Electronic energy + Delta-G solvation = -18755.632749 eV Core-core repulsion = 15579.302087 eV Total energy + Delta-G solvation = -3176.330662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94153 -39.35579 -37.58895 -35.72836 -34.77552 -31.59458 -30.00672 -28.78236 -26.67340 -25.19556 -24.37820 -21.73988 -20.23954 -18.98653 -18.31081 -17.07381 -16.91915 -15.88455 -15.67115 -15.23490 -15.01536 -14.45479 -14.24290 -14.02899 -13.18608 -13.02011 -12.79491 -12.70660 -12.39101 -11.68501 -11.54952 -11.38846 -11.21406 -10.90644 -10.71938 -10.41218 -10.22379 -9.75222 -9.35626 -9.14388 -9.02534 -8.66608 -8.40605 -7.60873 -6.41966 -4.03093 1.12567 1.82847 2.15417 2.82276 3.08196 3.16760 3.22790 3.26777 3.38468 4.11287 4.37364 4.57513 4.88944 5.10700 5.46341 5.52807 5.63917 5.71518 5.79466 5.92542 6.03965 6.24872 6.62519 6.75421 7.02719 7.57563 7.67069 8.18350 8.40865 8.59925 9.03944 9.29124 9.72378 10.63381 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.008550 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.255854 B = 3274.136150 C = 4547.490099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.447 3.553 4 O -0.503 6.503 5 C 0.121 3.879 6 N -0.401 5.401 7 C -0.295 4.295 8 H 0.110 0.890 9 C 0.039 3.961 10 N -0.873 5.873 11 Si 0.922 3.078 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.539 3.461 16 O -0.598 6.598 17 C 0.054 3.946 18 C -0.241 4.241 19 S 0.130 5.870 20 C -0.012 4.012 21 N -0.385 5.385 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.149 0.851 26 H 0.102 0.898 27 H 0.273 0.727 28 H 0.180 0.820 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 4.332 2.227 5.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.288 3.712 4 O -0.389 6.389 5 C -0.005 4.005 6 N -0.116 5.116 7 C -0.424 4.424 8 H 0.127 0.873 9 C -0.166 4.166 10 N -0.511 5.511 11 Si 0.749 3.251 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.327 3.673 16 O -0.484 6.484 17 C -0.080 4.080 18 C -0.383 4.383 19 S 0.383 5.617 20 C -0.312 4.312 21 N -0.097 5.097 22 H 0.111 0.889 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.166 0.834 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.197 0.803 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.443 4.804 2.556 5.630 hybrid contribution -0.543 -0.497 -1.033 1.268 sum -1.986 4.307 1.524 4.982 Atomic orbital electron populations 1.23090 0.78115 1.02605 1.01985 1.86545 1.22197 1.34788 1.84984 1.25217 0.93465 0.80885 0.71587 1.90582 1.66982 1.36395 1.44965 1.21112 0.84502 0.87403 1.07438 1.42940 1.54494 1.08708 1.05497 1.19770 1.37234 0.98623 0.86785 0.87303 1.25454 0.94369 0.96147 1.00599 1.69744 1.27169 1.20639 1.33517 0.86054 0.78593 0.79109 0.81387 1.19388 1.20943 1.19924 1.17307 0.81607 0.84459 0.83945 1.90652 1.57743 1.68147 1.31840 1.20566 1.03083 0.97421 0.86930 1.26407 1.08899 0.98166 1.04845 1.82477 1.57320 1.14546 1.07346 1.28833 1.05977 0.97282 0.99133 1.67620 1.08501 1.05096 1.28514 0.88892 0.92540 0.92483 0.83410 0.88001 0.91652 0.80295 0.78837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.62 15 2 O -0.37 -7.28 10.57 -39.24 -0.41 -7.70 15 3 C 0.45 10.46 8.02 36.01 0.29 10.75 15 4 O -0.50 -13.02 16.18 -18.75 -0.30 -13.32 15 5 C 0.12 2.94 5.55 -5.19 -0.03 2.91 15 6 N -0.40 -10.58 1.99 -117.40 -0.23 -10.81 15 7 C -0.30 -7.81 7.55 -14.99 -0.11 -7.93 15 8 H 0.11 2.92 6.28 -52.48 -0.33 2.59 15 9 C 0.04 0.99 5.01 -17.46 -0.09 0.90 15 10 N -0.87 -22.67 11.43 55.50 0.63 -22.04 15 11 Si 0.92 20.14 29.60 -169.99 -5.03 15.11 15 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 15 C 0.54 14.12 7.60 -12.63 -0.10 14.03 15 16 O -0.60 -16.29 16.36 5.23 0.09 -16.20 15 17 C 0.05 1.24 6.49 -84.53 -0.55 0.69 15 18 C -0.24 -4.49 10.62 29.68 0.32 -4.18 15 19 S 0.13 1.82 22.96 -107.50 -2.47 -0.64 15 20 C -0.01 -0.19 12.17 51.43 0.63 0.43 15 21 N -0.38 -8.31 7.23 -12.37 -0.09 -8.40 15 22 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.06 0.86 8.13 -51.93 -0.42 0.43 15 24 H 0.06 0.86 8.13 -51.93 -0.42 0.44 15 25 H 0.15 3.65 5.57 -51.93 -0.29 3.36 15 26 H 0.10 2.39 7.50 -51.93 -0.39 2.00 15 27 H 0.27 6.70 8.32 -40.82 -0.34 6.36 15 28 H 0.18 3.13 8.04 -52.48 -0.42 2.71 15 29 H 0.19 2.40 8.06 -52.48 -0.42 1.98 15 LS Contribution 279.38 15.07 4.21 4.21 Total: -1.00 -32.27 279.38 -4.44 -36.72 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -2.26 Total: 3.84 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 1.42 Total: 19.24 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.31 Total: -41.25 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.63 Total: -37.22 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.47 Total: -0.64 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.27 -4.44 -36.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120504294.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.707 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds