Wall clock time and date at job start Mon Mar 30 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39733 * 120.20455 * 126.71343 * 3 2 1 5 5 C 1.37797 * 119.91913 * 180.27280 * 4 3 2 6 6 C 1.50699 * 119.82795 * 180.02562 * 5 4 3 7 7 F 1.39902 * 109.46996 * 179.97438 * 6 5 4 8 8 F 1.39899 * 109.46987 * 299.97882 * 6 5 4 9 9 F 1.39897 * 109.47200 * 59.97867 * 6 5 4 10 10 C 1.38570 * 120.34495 * 359.97438 * 5 4 3 11 11 C 1.38024 * 120.42339 * 359.97438 * 10 5 4 12 12 C 1.38879 * 120.06710 * 0.02562 * 11 10 5 13 13 N 1.39027 * 120.17147 * 179.97438 * 12 11 10 14 14 C 1.46502 * 120.00102 * 0.02562 * 13 12 11 15 15 C 1.50694 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00584 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00019 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00200 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99755 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47032 * 90.00166 * 19 17 15 21 21 H 1.48494 * 109.47125 * 210.00018 * 19 17 15 22 22 H 1.48497 * 109.47351 * 330.00135 * 19 17 15 23 23 H 1.07993 * 120.04078 * 0.27428 * 4 3 2 24 24 H 1.08003 * 119.78922 * 179.97438 * 10 5 4 25 25 H 1.07991 * 119.96401 * 179.97438 * 11 10 5 26 26 H 0.97008 * 120.00210 * 180.02562 * 13 12 11 27 27 H 1.08998 * 109.46723 * 300.00172 * 14 13 12 28 28 H 1.09002 * 109.46803 * 60.00182 * 14 13 12 29 29 H 0.97003 * 119.99873 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2706 0.7229 -0.9681 5 6 4.6486 0.7148 -0.9660 6 6 5.4043 1.4950 -2.0106 7 9 6.7793 1.3365 -1.8070 8 9 5.0637 1.0225 -3.2826 9 9 5.0716 2.8502 -1.9120 10 6 5.3430 -0.0060 -0.0077 11 6 4.6633 -0.7235 0.9558 12 6 3.2746 -0.7276 0.9699 13 7 2.5878 -1.4500 1.9390 14 6 3.3289 -2.2092 2.9492 15 6 2.3576 -2.8974 3.8732 16 1 1.2944 -2.7807 3.7233 17 6 2.8261 -3.6754 4.9107 18 7 1.9784 -4.2764 5.7167 19 14 4.6650 -3.8768 5.1705 20 1 5.1565 -2.8091 6.0780 21 1 4.9368 -5.2051 5.7761 22 1 5.3635 -3.7762 3.8639 23 1 2.7344 1.2867 -1.7170 24 1 6.4230 -0.0063 -0.0146 25 1 5.2120 -1.2830 1.6989 26 1 1.6177 -1.4514 1.9463 27 1 3.9530 -2.9554 2.4574 28 1 3.9589 -1.5303 3.5240 29 1 2.3081 -4.8234 6.4469 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125450605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:42 Heat of formation + Delta-G solvation = -118.035576 kcal Electronic energy + Delta-G solvation = -19450.278029 eV Core-core repulsion = 15729.504543 eV Total energy + Delta-G solvation = -3720.773486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.99096 -48.51207 -48.45333 -40.91307 -37.53886 -37.20482 -34.77590 -32.59790 -31.90243 -29.42859 -26.19475 -25.23682 -24.22167 -22.26947 -20.56068 -19.52765 -19.31261 -19.09665 -17.88455 -17.78084 -17.26817 -16.19788 -15.69464 -15.36710 -15.34510 -15.21796 -14.98377 -14.90111 -14.76790 -14.67297 -14.61944 -14.52299 -14.32567 -14.10114 -13.81235 -13.46628 -12.93690 -12.70124 -12.65270 -12.22185 -11.86645 -11.66586 -11.41010 -10.84027 -10.10979 -8.66592 -8.38633 -6.49858 -0.18535 0.20416 1.40523 1.42446 1.52106 1.52988 1.82647 1.85576 2.31104 2.40123 2.71154 2.77623 2.97631 2.98960 3.27267 3.60889 3.72131 4.03309 4.23882 4.36580 4.62339 4.75350 4.90496 5.04023 5.06583 5.20661 5.26559 5.55613 5.84448 6.25610 6.45190 6.47673 6.65526 7.16264 8.77396 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.004795 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.747255 B = 5838.141415 C = 6835.094985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.278 3.722 3 C -0.139 4.139 4 C 0.044 3.956 5 C -0.263 4.263 6 C 0.524 3.476 7 F -0.177 7.177 8 F -0.183 7.183 9 F -0.183 7.183 10 C 0.021 3.979 11 C -0.206 4.206 12 C 0.288 3.712 13 N -0.710 5.710 14 C 0.226 3.774 15 C -0.561 4.561 16 H 0.033 0.967 17 C 0.015 3.985 18 N -0.942 5.942 19 Si 0.953 3.047 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.227 1.227 23 H 0.156 0.844 24 H 0.169 0.831 25 H 0.151 0.849 26 H 0.395 0.605 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 10.721 -14.439 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.035 4.035 3 C -0.148 4.148 4 C 0.023 3.977 5 C -0.267 4.267 6 C 0.470 3.530 7 F -0.158 7.158 8 F -0.164 7.164 9 F -0.164 7.164 10 C 0.001 3.999 11 C -0.228 4.228 12 C 0.172 3.828 13 N -0.328 5.328 14 C 0.103 3.897 15 C -0.599 4.599 16 H 0.051 0.949 17 C -0.185 4.185 18 N -0.581 5.581 19 Si 0.774 3.226 20 H -0.186 1.186 21 H -0.212 1.212 22 H -0.150 1.150 23 H 0.174 0.826 24 H 0.186 0.814 25 H 0.168 0.832 26 H 0.229 0.771 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.392 10.466 -14.106 20.935 hybrid contribution -0.040 -0.342 0.505 0.612 sum 11.351 10.124 -13.601 20.404 Atomic orbital electron populations 1.81261 1.13084 1.10754 1.09490 1.25682 0.92652 0.92449 0.92730 1.15269 0.83385 1.12250 1.03927 1.20621 0.92337 0.91222 0.93553 1.19439 0.93895 1.10670 1.02708 1.17995 0.77113 0.77364 0.80531 1.93156 1.32400 1.95388 1.94849 1.93209 1.92085 1.88278 1.42843 1.93209 1.92276 1.34780 1.96148 1.21117 1.01709 0.88384 0.88706 1.20781 0.90459 1.07380 1.04200 1.18320 0.92753 0.86269 0.85458 1.45362 1.09114 1.49100 1.29191 1.19508 0.92551 0.91211 0.86387 1.21316 0.93534 1.31280 1.13724 0.94874 1.25918 1.04291 0.93848 0.94424 1.70047 1.37634 1.32385 1.18010 0.85638 0.78003 0.78090 0.80833 1.18606 1.21174 1.14977 0.82621 0.81398 0.83170 0.77122 0.93998 0.94173 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.48 18.54 19.00 0.35 -16.13 15 2 C 0.28 8.51 14.09 88.33 1.24 9.76 15 3 C -0.14 -3.58 5.76 -21.15 -0.12 -3.70 15 4 C 0.04 0.88 9.28 22.53 0.21 1.09 15 5 C -0.26 -4.90 5.37 -19.89 -0.11 -5.01 15 6 C 0.52 9.35 3.31 71.24 0.24 9.59 15 7 F -0.18 -3.04 15.95 44.97 0.72 -2.32 15 8 F -0.18 -3.47 17.23 44.97 0.77 -2.69 15 9 F -0.18 -3.47 17.23 44.97 0.77 -2.69 15 10 C 0.02 0.36 9.41 22.30 0.21 0.57 15 11 C -0.21 -4.67 9.29 22.37 0.21 -4.46 15 12 C 0.29 8.12 6.66 38.67 0.26 8.38 15 13 N -0.71 -25.31 5.63 -342.46 -1.93 -27.24 15 14 C 0.23 9.05 3.73 85.63 0.32 9.37 15 15 C -0.56 -29.44 9.83 25.60 0.25 -29.19 15 16 H 0.03 1.98 7.84 -2.91 -0.02 1.96 15 17 C 0.01 0.77 5.47 84.66 0.46 1.24 15 18 N -0.94 -55.57 13.96 21.45 0.30 -55.27 15 19 Si 0.95 38.33 27.47 68.60 1.88 40.22 15 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 21 H -0.29 -11.65 7.11 99.48 0.71 -10.95 15 22 H -0.23 -7.81 6.54 99.48 0.65 -7.16 15 23 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 24 H 0.17 2.06 7.13 -2.91 -0.02 2.04 15 25 H 0.15 3.25 6.72 -2.92 -0.02 3.23 15 26 H 0.39 15.24 7.18 -92.70 -0.67 14.58 15 27 H 0.04 1.59 7.00 -2.39 -0.02 1.57 15 28 H 0.04 1.50 7.37 -2.39 -0.02 1.49 15 29 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 Total: -1.00 -61.08 278.58 6.55 -54.53 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.51 Total: 13.97 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 3.17 Total: -2.38 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -1.28 Total: -98.63 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 2.27 Total: -7.71 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.88 Total: 40.22 kcal Total: -61.08 6.55 -54.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125450605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.507 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds