Wall clock time and date at job start Mon Mar 30 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46992 * 2 1 4 4 S 1.81393 * 109.46915 * 240.00142 * 2 1 3 5 5 C 1.81399 * 103.00232 * 64.99960 * 4 2 1 6 6 C 1.53006 * 109.47004 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.50697 * 109.46988 * 120.00026 * 2 1 3 16 16 C 1.38240 * 119.99048 * 59.72886 * 15 2 1 17 17 C 1.38210 * 120.01603 * 179.72587 * 16 15 2 18 18 C 1.38355 * 119.98659 * 0.54280 * 17 16 15 19 19 Cl 1.73596 * 120.01582 * 179.70640 * 18 17 16 20 20 C 1.38358 * 119.97127 * 359.73107 * 18 17 16 21 21 C 1.38210 * 119.98513 * 359.97438 * 20 18 17 22 22 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47177 * 299.99780 * 1 2 3 24 24 H 1.08999 * 109.47395 * 60.00463 * 1 2 3 25 25 H 1.09000 * 109.47234 * 59.99874 * 5 4 2 26 26 H 1.09001 * 109.47232 * 299.99385 * 5 4 2 27 27 H 1.08993 * 109.46955 * 300.00150 * 6 5 4 28 28 H 1.09000 * 109.47050 * 59.99979 * 6 5 4 29 29 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 30 30 H 1.08000 * 119.99137 * 359.97438 * 16 15 2 31 31 H 1.07996 * 120.00911 * 180.27452 * 17 16 15 32 32 H 1.07999 * 120.00347 * 179.97438 * 20 18 17 33 33 H 1.07999 * 119.99362 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8309 6 6 2.0050 -0.3778 -4.1713 7 6 1.5324 0.5111 -5.2927 8 1 0.9746 1.4091 -5.0714 9 6 1.8111 0.1776 -6.6011 10 7 2.4899 -0.9162 -6.8706 11 14 1.2259 1.2798 -7.9910 12 1 0.4901 2.4398 -7.4267 13 1 2.3969 1.7647 -8.7648 14 1 0.3248 0.5108 -8.8866 15 6 2.0323 -0.7104 1.2304 16 6 1.6936 -2.0322 1.4518 17 6 2.1586 -2.6860 2.5773 18 6 2.9541 -2.0139 3.4882 19 17 3.5323 -2.8320 4.9058 20 6 3.2881 -0.6893 3.2689 21 6 2.8275 -0.0384 2.1400 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 2.0001 1.2085 -2.7142 26 1 0.4791 0.2881 -2.8038 27 1 3.0922 -0.4503 -4.1982 28 1 1.5716 -1.3711 -4.2883 29 1 2.6863 -1.1507 -7.7910 30 1 1.0687 -2.5554 0.7431 31 1 1.8976 -3.7199 2.7478 32 1 3.9087 -0.1640 3.9798 33 1 3.0885 0.9954 1.9686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130023856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:54 Heat of formation + Delta-G solvation = -8.550523 kcal Electronic energy + Delta-G solvation = -15173.430065 eV Core-core repulsion = 12543.121313 eV Total energy + Delta-G solvation = -2630.308752 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.60779 -36.75300 -34.12485 -33.70189 -31.25343 -30.92582 -29.29702 -25.24995 -24.20971 -22.95890 -21.59175 -20.72509 -17.34263 -16.53739 -16.19209 -15.79580 -14.92520 -14.52304 -14.21431 -13.97748 -13.89192 -13.65680 -13.35043 -12.99624 -12.46178 -12.26337 -11.92969 -11.61130 -11.46294 -11.31609 -11.15434 -11.03952 -10.96421 -10.56652 -10.21073 -9.68386 -9.52701 -9.20406 -9.06181 -8.63137 -8.44430 -7.19417 -6.08068 -4.12756 0.87232 1.14054 1.94515 2.18698 3.16116 3.26613 3.34429 3.37865 3.53506 4.39877 4.47613 4.60403 4.71726 4.97581 5.14245 5.23662 5.27581 5.29994 5.50838 5.62939 5.75747 5.81369 5.95462 6.03941 6.05344 6.13374 6.17557 6.40682 6.61799 6.71457 7.54545 7.62898 7.88237 8.25254 8.92525 9.51361 11.02741 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.051488 B = 0.003063 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.683882 B = 9138.403948 C = 9338.635602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 H 0.091 0.909 4 S -0.270 6.270 5 C -0.061 4.061 6 C 0.038 3.962 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.050 4.050 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.038 4.038 19 Cl -0.078 7.078 20 C -0.111 4.111 21 C -0.097 4.097 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 -0.274 21.259 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 H 0.109 0.891 4 S -0.040 6.040 5 C -0.209 4.209 6 C -0.001 4.001 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.143 4.143 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.051 4.051 16 C -0.107 4.107 17 C -0.128 4.128 18 C -0.065 4.065 19 Cl -0.049 7.049 20 C -0.129 4.129 21 C -0.117 4.117 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.670 -1.391 21.155 21.211 hybrid contribution -0.812 1.604 -0.671 1.919 sum -1.482 0.213 20.484 20.539 Atomic orbital electron populations 1.22092 0.92530 1.03294 1.02267 1.22011 0.98759 1.01132 0.93699 0.89095 1.87112 1.76184 1.40182 1.00482 1.23736 1.02180 0.98947 0.96007 1.18901 0.97529 0.96661 0.87007 1.21128 1.35773 1.08535 0.90635 0.92424 1.25017 0.95069 0.95300 0.98901 1.69982 1.39296 1.24068 1.19535 0.86472 0.78539 0.80571 0.82038 1.19700 1.20880 1.20880 1.19476 0.96984 0.94297 0.94349 1.21073 0.99248 0.93911 0.96457 1.21039 0.97596 1.00422 0.93705 1.20932 1.01191 0.93708 0.90633 1.98362 1.87896 1.79207 1.39444 1.20979 1.00745 0.92825 0.98389 1.21004 0.97027 1.00290 0.93355 0.91262 0.92169 0.91587 0.91451 0.91249 0.95573 0.95552 0.92815 0.84392 0.84876 0.84966 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.91 37.16 0.33 -1.36 16 2 C -0.03 -0.37 3.01 -27.88 -0.08 -0.45 16 3 H 0.09 1.14 7.88 -51.92 -0.41 0.74 16 4 S -0.27 -4.82 20.77 -107.50 -2.23 -7.05 16 5 C -0.06 -1.24 5.58 37.16 0.21 -1.03 16 6 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 11 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C -0.05 -0.61 4.78 -104.62 -0.50 -1.11 16 16 C -0.09 -1.03 8.78 -39.59 -0.35 -1.38 16 17 C -0.11 -1.18 9.83 -39.55 -0.39 -1.57 16 18 C -0.04 -0.40 6.32 -39.49 -0.25 -0.65 16 19 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 20 C -0.11 -1.13 9.83 -39.55 -0.39 -1.51 16 21 C -0.10 -1.04 9.67 -39.59 -0.38 -1.43 16 22 H 0.07 0.81 7.37 -51.93 -0.38 0.43 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.83 6.92 -51.93 -0.36 0.47 16 25 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.07 1.34 7.14 -51.92 -0.37 0.97 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.14 1.60 7.56 -52.49 -0.40 1.20 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.18 7.94 -52.49 -0.42 0.76 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -29.45 309.68 -10.12 -39.57 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.41 Total: -2.55 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.35 Total: -22.82 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -2.23 Total: -7.05 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.45 -10.12 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130023856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.020 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds