Wall clock time and date at job start Mon Mar 30 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46992 * 2 1 4 4 S 1.81393 * 109.46915 * 240.00142 * 2 1 3 5 5 C 1.81399 * 103.00232 * 64.99960 * 4 2 1 6 6 C 1.53006 * 109.47004 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.50697 * 109.46988 * 120.00026 * 2 1 3 16 16 C 1.38240 * 119.99048 * 59.72886 * 15 2 1 17 17 C 1.38210 * 120.01603 * 179.72587 * 16 15 2 18 18 C 1.38355 * 119.98659 * 0.54280 * 17 16 15 19 19 Cl 1.73596 * 120.01582 * 179.70640 * 18 17 16 20 20 C 1.38358 * 119.97127 * 359.73107 * 18 17 16 21 21 C 1.38210 * 119.98513 * 359.97438 * 20 18 17 22 22 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47177 * 299.99780 * 1 2 3 24 24 H 1.08999 * 109.47395 * 60.00463 * 1 2 3 25 25 H 1.09000 * 109.47234 * 59.99874 * 5 4 2 26 26 H 1.09001 * 109.47232 * 299.99385 * 5 4 2 27 27 H 1.08993 * 109.46955 * 300.00150 * 6 5 4 28 28 H 1.09000 * 109.47050 * 59.99979 * 6 5 4 29 29 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 30 30 H 1.08000 * 119.99137 * 359.97438 * 16 15 2 31 31 H 1.07996 * 120.00911 * 180.27452 * 17 16 15 32 32 H 1.07999 * 120.00347 * 179.97438 * 20 18 17 33 33 H 1.07999 * 119.99362 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8309 6 6 2.0050 -0.3778 -4.1713 7 6 1.5324 0.5111 -5.2927 8 1 0.9746 1.4091 -5.0714 9 6 1.8111 0.1776 -6.6011 10 7 2.4899 -0.9162 -6.8706 11 14 1.2259 1.2798 -7.9910 12 1 0.4901 2.4398 -7.4267 13 1 2.3969 1.7647 -8.7648 14 1 0.3248 0.5108 -8.8866 15 6 2.0323 -0.7104 1.2304 16 6 1.6936 -2.0322 1.4518 17 6 2.1586 -2.6860 2.5773 18 6 2.9541 -2.0139 3.4882 19 17 3.5323 -2.8320 4.9058 20 6 3.2881 -0.6893 3.2689 21 6 2.8275 -0.0384 2.1400 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 2.0001 1.2085 -2.7142 26 1 0.4791 0.2881 -2.8038 27 1 3.0922 -0.4503 -4.1982 28 1 1.5716 -1.3711 -4.2883 29 1 2.6863 -1.1507 -7.7910 30 1 1.0687 -2.5554 0.7431 31 1 1.8976 -3.7199 2.7478 32 1 3.9087 -0.1640 3.9798 33 1 3.0885 0.9954 1.9686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130023856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:54 Heat of formation + Delta-G solvation = -22.070098 kcal Electronic energy + Delta-G solvation = -15174.016318 eV Core-core repulsion = 12543.121313 eV Total energy + Delta-G solvation = -2630.895005 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46068 -37.56440 -35.78217 -35.05433 -32.91619 -32.07702 -30.22962 -27.27822 -25.15269 -23.80058 -23.31122 -21.89442 -18.67354 -18.21059 -17.32907 -16.75717 -16.49278 -15.93166 -15.59520 -15.25684 -15.07628 -14.56771 -14.41540 -14.12695 -13.90892 -13.72442 -13.20340 -12.93743 -12.82873 -12.60668 -12.39255 -12.25671 -12.17926 -12.02177 -11.77502 -11.67642 -11.18246 -10.71078 -10.61466 -10.01818 -9.55006 -8.63149 -8.23224 -6.36743 -0.06005 0.31207 0.93219 1.13288 1.41345 1.41397 1.54894 1.74935 2.40402 2.67062 3.10176 3.52144 3.73500 3.94098 4.05121 4.19497 4.27364 4.38474 4.39695 4.46427 4.66871 4.74426 4.81442 4.92117 4.99340 5.15868 5.21868 5.25279 5.38933 5.50391 5.52650 5.74235 5.77895 6.11261 6.78165 7.32959 8.88735 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.051488 B = 0.003063 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.683882 B = 9138.403948 C = 9338.635602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 H 0.102 0.898 4 S -0.305 6.305 5 C -0.049 4.049 6 C 0.045 3.955 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.971 3.029 12 H -0.258 1.258 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.066 4.066 16 C -0.097 4.097 17 C -0.114 4.114 18 C -0.043 4.043 19 Cl -0.070 7.070 20 C -0.110 4.110 21 C -0.096 4.096 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.078 0.922 27 H -0.006 1.006 28 H -0.004 1.004 29 H 0.265 0.735 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 1.183 22.626 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.121 0.879 4 S -0.074 6.074 5 C -0.197 4.197 6 C 0.006 3.994 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.795 3.205 12 H -0.182 1.182 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.068 4.068 16 C -0.116 4.116 17 C -0.132 4.132 18 C -0.070 4.070 19 Cl -0.042 7.042 20 C -0.129 4.129 21 C -0.115 4.115 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.012 0.988 28 H 0.014 0.986 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.237 0.072 22.527 22.561 hybrid contribution -0.598 1.084 -0.927 1.546 sum -1.834 1.156 21.600 21.709 Atomic orbital electron populations 1.22074 0.91372 1.03489 1.03008 1.22055 0.99600 1.00958 0.91050 0.87924 1.87167 1.76834 1.40920 1.02510 1.23337 1.02629 0.99133 0.94583 1.18668 0.95158 0.95344 0.90188 1.21584 1.35713 1.09051 0.91617 0.91424 1.26029 0.95029 0.96757 1.01972 1.70124 1.40665 1.26085 1.20328 0.85306 0.78143 0.78762 0.78265 1.18188 1.20389 1.20353 1.19470 0.98331 0.94643 0.94337 1.21123 0.99597 0.94070 0.96856 1.21194 0.97509 1.01115 0.93417 1.21107 1.00954 0.94134 0.90814 1.98367 1.87748 1.79120 1.38924 1.21247 1.00466 0.92659 0.98511 1.21235 0.96072 1.01215 0.93024 0.91442 0.89692 0.92377 0.90748 0.90328 0.98776 0.98610 0.92599 0.84840 0.83619 0.82847 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.91 71.98 0.64 -2.44 16 2 C -0.01 -0.22 3.01 29.85 0.09 -0.13 16 3 H 0.10 2.34 7.88 -2.39 -0.02 2.33 16 4 S -0.30 -10.92 20.77 -56.49 -1.17 -12.09 16 5 C -0.05 -2.01 5.58 71.98 0.40 -1.61 16 6 C 0.04 2.39 4.98 29.85 0.15 2.54 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 11 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 C -0.07 -1.50 4.78 -19.86 -0.09 -1.60 16 16 C -0.10 -2.18 8.78 22.26 0.20 -1.99 16 17 C -0.11 -2.30 9.83 22.29 0.22 -2.08 16 18 C -0.04 -0.83 6.32 22.33 0.14 -0.69 16 19 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 20 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 21 C -0.10 -1.82 9.67 22.26 0.22 -1.60 16 22 H 0.07 1.50 7.37 -2.39 -0.02 1.48 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.36 6.92 -2.39 -0.02 1.35 16 25 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.08 3.03 7.14 -2.39 -0.02 3.02 16 27 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.13 3.06 7.56 -2.91 -0.02 3.03 16 31 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.15 2.23 7.94 -2.91 -0.02 2.20 16 Total: -1.00 -64.13 309.68 5.02 -59.11 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.09 Total: 6.27 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 2.87 Total: -40.94 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -10.92 SS G_CDS: -1.17 Total: -12.09 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -64.13 5.02 -59.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130023856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.043 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds