Wall clock time and date at job start Mon Mar 30 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46438 * 2 1 4 4 S 1.81397 * 109.46961 * 119.99842 * 2 1 3 5 5 C 1.81404 * 103.00143 * 295.00346 * 4 2 1 6 6 C 1.53000 * 109.46946 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99611 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99711 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00219 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46794 * 90.00022 * 11 9 7 13 13 H 1.48502 * 109.47140 * 210.00005 * 11 9 7 14 14 H 1.48501 * 109.46982 * 330.00118 * 11 9 7 15 15 C 1.50692 * 109.47311 * 240.00201 * 2 1 3 16 16 C 1.38246 * 119.98997 * 299.72235 * 15 2 1 17 17 C 1.38205 * 120.01569 * 179.72805 * 16 15 2 18 18 C 1.38354 * 119.98618 * 0.55011 * 17 16 15 19 19 Cl 1.73606 * 120.01602 * 179.70620 * 18 17 16 20 20 C 1.38354 * 119.97154 * 359.72106 * 18 17 16 21 21 C 1.38212 * 119.98729 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.46438 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47448 * 299.99853 * 1 2 3 24 24 H 1.09005 * 109.47103 * 60.00454 * 1 2 3 25 25 H 1.09002 * 109.47124 * 60.00087 * 5 4 2 26 26 H 1.09001 * 109.46975 * 300.00209 * 5 4 2 27 27 H 1.09001 * 109.47194 * 299.99756 * 6 5 4 28 28 H 1.08992 * 109.47399 * 59.99928 * 6 5 4 29 29 H 0.97000 * 119.99684 * 179.97438 * 10 9 7 30 30 H 1.08002 * 119.98491 * 0.02562 * 16 15 2 31 31 H 1.07996 * 120.01064 * 180.27328 * 17 16 15 32 32 H 1.08009 * 120.00362 * 179.97438 * 20 18 17 33 33 H 1.08005 * 119.98942 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5663 0.2153 2.8309 6 6 2.0049 -0.3778 4.1713 7 6 1.5322 0.5112 5.2927 8 1 0.9751 1.4095 5.0714 9 6 1.8109 0.1775 6.6012 10 7 1.3989 0.9535 7.5797 11 14 2.7739 -1.3768 6.9839 12 1 4.2254 -1.0646 7.0151 13 1 2.3531 -1.9069 8.3057 14 1 2.5087 -2.3942 5.9353 15 6 2.0324 -0.7103 -1.2304 16 6 1.7031 -2.0355 -1.4461 17 6 2.1588 -2.6859 -2.5772 18 6 2.9543 -2.0137 -3.4881 19 17 3.5336 -2.8322 -4.9053 20 6 3.2882 -0.6891 -3.2688 21 6 2.8275 -0.0383 -2.1399 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 0.4791 0.2881 2.8037 26 1 2.0000 1.2085 2.7142 27 1 1.5715 -1.3711 4.2883 28 1 3.0921 -0.4503 4.1983 29 1 1.5947 0.7186 8.5002 30 1 1.0855 -2.5612 -0.7329 31 1 1.8979 -3.7199 -2.7479 32 1 3.9095 -0.1640 -3.9793 33 1 3.0878 0.9959 -1.9690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130024081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:55 Heat of formation + Delta-G solvation = -4.984919 kcal Electronic energy + Delta-G solvation = -15222.346724 eV Core-core repulsion = 12592.192588 eV Total energy + Delta-G solvation = -2630.154136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66511 -36.80079 -34.18701 -33.73595 -31.32052 -31.27307 -29.38461 -25.53725 -24.26445 -23.01415 -21.46566 -20.57781 -17.40841 -16.99520 -16.25838 -15.84652 -14.98969 -14.45874 -14.28494 -14.05724 -13.91047 -13.71944 -13.34137 -13.05598 -12.77041 -12.41963 -11.99856 -11.76338 -11.53991 -11.47486 -11.31122 -11.12218 -11.01901 -10.32860 -10.07037 -9.89443 -9.55788 -9.26818 -9.18143 -8.70258 -8.61797 -7.32413 -6.12741 -4.12872 0.80879 1.08587 1.89677 2.08170 3.02672 3.28532 3.35931 3.41039 3.47637 4.39513 4.41136 4.54375 4.66553 4.91559 5.08360 5.18034 5.21388 5.24620 5.45418 5.58489 5.70249 5.75814 5.85085 5.96403 5.98992 6.00061 6.09528 6.34465 6.52017 6.56417 7.08547 7.20704 7.63721 8.40593 8.88778 9.48039 10.99996 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.039831 B = 0.003350 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.796087 B = 8356.281810 C = 8719.974058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 H 0.093 0.907 4 S -0.278 6.278 5 C -0.053 4.053 6 C 0.003 3.997 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.878 3.122 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.263 1.263 15 C -0.051 4.051 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.037 4.037 19 Cl -0.077 7.077 20 C -0.111 4.111 21 C -0.096 4.096 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 -4.644 -23.277 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 H 0.111 0.889 4 S -0.047 6.047 5 C -0.201 4.201 6 C -0.036 4.036 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.131 4.131 10 N -0.538 5.538 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.188 1.188 15 C -0.053 4.053 16 C -0.107 4.107 17 C -0.128 4.128 18 C -0.064 4.064 19 Cl -0.048 7.048 20 C -0.129 4.129 21 C -0.116 4.116 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.781 -5.635 -23.116 23.859 hybrid contribution -0.065 0.358 0.191 0.411 sum 1.716 -5.277 -22.924 23.586 Atomic orbital electron populations 1.22102 0.92371 1.03342 1.02464 1.21994 0.98847 1.01101 0.93229 0.88902 1.86999 1.76324 1.40405 1.00997 1.23522 1.02736 0.99038 0.94762 1.19360 0.96900 0.97183 0.90134 1.20958 1.36436 1.09374 0.89322 0.90835 1.24964 0.95289 0.96704 0.96142 1.69896 1.46344 1.37933 0.99604 0.86788 0.80633 0.84128 0.77925 1.20078 1.21184 1.18783 1.19470 0.97115 0.94266 0.94429 1.21068 0.99272 0.93896 0.96436 1.21039 0.97667 1.00472 0.93635 1.20941 1.01085 0.93723 0.90639 1.98365 1.87820 1.79169 1.39483 1.20990 1.00749 0.92814 0.98380 1.21011 0.96876 1.00327 0.93354 0.91251 0.91457 0.92011 0.90613 0.90825 0.95594 0.96059 0.92514 0.84411 0.84873 0.84918 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.92 37.16 0.33 -1.30 16 2 C -0.02 -0.30 3.01 -27.88 -0.08 -0.38 16 3 H 0.09 1.11 7.88 -51.92 -0.41 0.70 16 4 S -0.28 -4.65 20.75 -107.50 -2.23 -6.88 16 5 C -0.05 -1.03 5.58 37.16 0.21 -0.82 16 6 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 11 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 15 C -0.05 -0.60 4.78 -104.62 -0.50 -1.10 16 16 C -0.09 -0.98 8.77 -39.59 -0.35 -1.32 16 17 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 18 C -0.04 -0.38 6.32 -39.50 -0.25 -0.63 16 19 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 20 C -0.11 -1.07 9.83 -39.55 -0.39 -1.46 16 21 C -0.10 -0.98 9.67 -39.59 -0.38 -1.36 16 22 H 0.07 0.77 7.40 -51.93 -0.38 0.39 16 23 H 0.07 0.81 6.92 -51.93 -0.36 0.46 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.42 7.14 -51.92 -0.37 1.05 16 26 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 27 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 28 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.14 1.50 7.59 -52.49 -0.40 1.10 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.12 7.95 -52.48 -0.42 0.71 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -29.77 306.12 -9.74 -39.51 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.38 Total: -2.52 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.35 Total: -22.87 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -2.23 Total: -6.88 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.77 -9.74 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130024081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.529 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds