Wall clock time and date at job start Mon Mar 30 2020 01:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 120.00095 * 2 1 4 4 H 1.08001 * 119.99840 * 202.37029 * 3 2 1 5 5 C 1.38816 * 119.99913 * 22.36970 * 3 2 1 6 6 N 1.31616 * 119.99835 * 11.33860 * 5 3 2 7 7 Si 1.86796 * 119.99818 * 191.33686 * 5 3 2 8 8 H 1.48503 * 109.47327 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47071 * 119.99790 * 7 5 3 10 10 H 1.48489 * 109.47410 * 239.99859 * 7 5 3 11 11 C 1.46498 * 120.00277 * 179.97438 * 2 1 3 12 12 C 1.50702 * 109.47489 * 270.00645 * 11 2 1 13 13 C 1.38263 * 119.98540 * 270.29419 * 12 11 2 14 14 C 1.38194 * 120.01447 * 180.25357 * 13 12 11 15 15 C 1.38368 * 119.98189 * 359.46530 * 14 13 12 16 16 Cl 1.73609 * 120.00986 * 180.27351 * 15 14 13 17 17 C 1.38327 * 119.97726 * 0.25940 * 15 14 13 18 18 N 1.48020 * 120.00601 * 179.97438 * 17 15 14 19 19 O 1.21799 * 120.00096 * 179.97438 * 18 17 15 20 20 O 1.21803 * 120.00084 * 0.02562 * 18 17 15 21 21 C 1.38223 * 119.98949 * 89.99319 * 12 11 2 22 22 H 1.08999 * 109.47341 * 274.20555 * 1 2 3 23 23 H 1.09003 * 109.47347 * 34.20432 * 1 2 3 24 24 H 1.08993 * 109.47227 * 154.20685 * 1 2 3 25 25 H 0.96999 * 119.99805 * 180.02562 * 6 5 3 26 26 H 1.08994 * 109.47448 * 150.00038 * 11 2 1 27 27 H 1.09001 * 109.46740 * 30.00103 * 11 2 1 28 28 H 1.08007 * 119.99441 * 359.97438 * 13 12 11 29 29 H 1.07995 * 120.00733 * 179.75104 * 14 13 12 30 30 H 1.07997 * 119.98991 * 0.02972 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3560 5 6 1.5339 2.3429 0.4575 6 7 0.3845 2.2689 1.0943 7 14 2.3369 4.0047 0.1694 8 1 3.6138 3.8169 -0.5649 9 1 1.4269 4.8618 -0.6322 10 1 2.6078 4.6567 1.4757 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4216 13 6 3.5979 -1.2986 2.0750 14 6 3.8313 -1.7011 3.3763 15 6 2.9091 -2.5000 4.0290 16 17 3.1982 -3.0001 5.6661 17 6 1.7567 -2.8998 3.3766 18 7 0.7701 -3.7549 4.0740 19 8 -0.2448 -4.1065 3.4996 20 8 0.9727 -4.1062 5.2225 21 6 1.5269 -2.5010 2.0732 22 1 -0.3634 0.0754 1.0249 23 1 -0.3634 0.8499 -0.5777 24 1 -0.3633 -0.9252 -0.4471 25 1 -0.0460 3.0773 1.4137 26 1 3.1499 -1.1386 -0.5133 27 1 1.6084 -2.0285 -0.5130 28 1 4.3157 -0.6716 1.5669 29 1 4.7310 -1.3883 3.8853 30 1 0.6273 -2.8131 1.5637 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153649125.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:08 Heat of formation + Delta-G solvation = 31.636150 kcal Electronic energy + Delta-G solvation = -18319.950303 eV Core-core repulsion = 15145.090961 eV Total energy + Delta-G solvation = -3174.859342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.28348 -40.63886 -38.08422 -37.60935 -37.22648 -33.96786 -33.01533 -31.96909 -28.23357 -27.58725 -27.45679 -24.00678 -23.73596 -22.33574 -19.96503 -19.75392 -18.77945 -18.68870 -17.84929 -16.90751 -16.82835 -15.77539 -15.58434 -15.18173 -15.08101 -14.64747 -14.05844 -13.47422 -13.24178 -13.03483 -12.98246 -12.75470 -12.69874 -12.51593 -12.46788 -12.27330 -12.10696 -12.00107 -11.84606 -11.48447 -10.70246 -10.61577 -9.97677 -8.90405 -7.87171 -5.34837 -1.26278 -0.15983 0.22985 0.30389 0.78110 1.46638 1.50216 1.58432 2.19717 2.50841 3.19949 3.30856 3.56243 3.76576 3.85351 3.96084 3.99312 4.38133 4.56634 4.67493 4.81066 4.86135 4.96463 5.10830 5.30549 5.34079 5.44357 5.62629 5.70165 6.27074 6.50552 7.08669 7.78757 8.22596 9.15901 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.005726 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.736632 B = 4888.389785 C = 5332.760525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.088 0.912 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.964 3.036 8 H -0.257 1.257 9 H -0.298 1.298 10 H -0.298 1.298 11 C 0.176 3.824 12 C -0.085 4.085 13 C -0.036 4.036 14 C -0.102 4.102 15 C -0.008 4.008 16 Cl -0.019 7.019 17 C -0.061 4.061 18 N 0.032 4.968 19 O -0.196 6.196 20 O -0.151 6.151 21 C -0.045 4.045 22 H -0.003 1.003 23 H 0.022 0.978 24 H 0.034 0.966 25 H 0.246 0.754 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.183 0.817 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.743 -8.899 1.980 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.323 5.323 3 C -0.385 4.385 4 H 0.106 0.894 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.793 3.207 8 H -0.180 1.180 9 H -0.225 1.225 10 H -0.226 1.226 11 C 0.050 3.950 12 C -0.090 4.090 13 C -0.055 4.055 14 C -0.121 4.121 15 C -0.037 4.037 16 Cl 0.010 6.990 17 C -0.145 4.145 18 N 0.547 4.453 19 O -0.403 6.403 20 O -0.371 6.371 21 C -0.065 4.065 22 H 0.016 0.984 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.201 0.799 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.070 -8.401 1.752 12.486 hybrid contribution -0.610 0.852 0.692 1.256 sum 8.460 -7.548 2.444 11.598 Atomic orbital electron populations 1.20622 0.82765 0.96538 0.97417 1.44365 1.02054 1.01479 1.84401 1.19691 0.98789 0.85650 1.34393 0.89390 1.25828 0.98235 1.01993 0.98617 1.70254 1.19271 1.27429 1.41350 0.85237 0.78451 0.80187 0.76786 1.18040 1.22526 1.22563 1.20294 0.98468 0.87504 0.88687 1.21464 0.92648 0.92965 1.01955 1.21805 0.96475 0.93912 0.93279 1.21497 0.99616 0.96102 0.94905 1.20860 0.94118 0.99701 0.89026 1.98425 1.95435 1.89335 1.15762 1.21013 0.92602 1.05254 0.95648 1.43700 1.01243 0.99504 1.00807 1.94513 1.17120 1.60046 1.68594 1.94537 1.82331 1.58280 1.01927 1.20992 1.00270 0.94818 0.90405 0.98442 0.95908 0.94715 0.94461 0.89406 0.90469 0.81364 0.79947 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.83 9.01 127.77 1.15 8.99 16 2 N -0.60 -26.03 2.91 -731.33 -2.13 -28.16 16 3 C -0.26 -12.10 9.67 84.03 0.81 -11.28 16 4 H 0.09 3.84 7.84 -2.91 -0.02 3.82 16 5 C -0.05 -2.63 5.13 84.86 0.44 -2.19 16 6 N -0.94 -52.58 10.59 21.65 0.23 -52.35 16 7 Si 0.96 41.55 29.57 68.60 2.03 43.58 16 8 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 9 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 11 C 0.18 5.61 5.83 85.63 0.50 6.11 16 12 C -0.09 -2.62 5.46 -19.86 -0.11 -2.73 16 13 C -0.04 -0.93 9.70 22.27 0.22 -0.72 16 14 C -0.10 -2.48 9.83 22.29 0.22 -2.27 16 15 C -0.01 -0.23 6.32 22.32 0.14 -0.09 16 16 Cl -0.02 -0.51 25.94 -2.72 -0.07 -0.58 16 17 C -0.06 -2.02 6.85 36.39 0.25 -1.77 16 18 N 0.03 1.17 4.45 -46.41 -0.21 0.96 16 19 O -0.20 -7.32 18.45 18.89 0.35 -6.98 16 20 O -0.15 -5.38 16.02 18.88 0.30 -5.08 16 21 C -0.04 -1.45 9.21 22.26 0.21 -1.24 16 22 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 23 H 0.02 1.13 7.19 -2.39 -0.02 1.12 16 24 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 25 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 26 H 0.09 2.43 7.98 -2.39 -0.02 2.41 16 27 H 0.08 2.15 7.81 -2.39 -0.02 2.14 16 28 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.15 4.80 7.61 -2.91 -0.02 4.78 16 Total: -1.00 -60.56 284.39 5.49 -55.07 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: 1.17 Total: 0.72 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 3.82 Total: -7.19 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.10 Total: -79.55 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.65 Total: -12.06 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.58 kcal Total: -60.56 5.49 -55.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153649125.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.706 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds