Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48498 * 109.46747 * 274.98108 * 3 2 1 5 5 H 1.48491 * 109.46990 * 34.98318 * 3 2 1 6 6 H 1.48498 * 109.47054 * 154.98615 * 3 2 1 7 7 C 1.40059 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 186.14830 * 7 2 1 9 9 C 1.46371 * 119.99873 * 6.14871 * 7 2 1 10 10 O 1.21685 * 120.00586 * 353.93989 * 9 7 2 11 11 N 1.34777 * 119.99685 * 173.94021 * 9 7 2 12 12 C 1.46492 * 120.00296 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47484 * 180.02562 * 12 11 9 14 14 O 1.42893 * 109.47185 * 65.00261 * 13 12 11 15 15 C 1.35701 * 116.99994 * 179.97438 * 14 13 12 16 16 N 1.32247 * 119.69220 * 0.02562 * 15 14 13 17 17 C 1.31949 * 121.66107 * 179.97438 * 16 15 14 18 18 C 1.38081 * 120.85828 * 359.97438 * 17 16 15 19 19 C 1.38791 * 119.29761 * 0.24771 * 18 17 16 20 20 C 1.38514 * 118.47244 * 359.53551 * 19 18 17 21 21 Cl 1.73593 * 120.45214 * 180.22107 * 20 19 18 22 22 H 0.96996 * 120.00170 * 359.97438 * 1 2 3 23 23 H 0.97008 * 120.00183 * 359.97438 * 11 9 7 24 24 H 1.09003 * 109.46977 * 59.99515 * 12 11 9 25 25 H 1.09000 * 109.47373 * 300.00329 * 12 11 9 26 26 H 1.08992 * 109.47023 * 304.99898 * 13 12 11 27 27 H 1.09002 * 109.46824 * 185.00042 * 13 12 11 28 28 H 1.08001 * 119.57260 * 180.02562 * 17 16 15 29 29 H 1.07995 * 120.35359 * 179.97438 * 18 17 16 30 30 H 1.07995 * 120.76519 * 179.74811 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4120 0.5920 7 6 2.0069 -1.2130 0.0005 8 1 3.0823 -1.2156 0.1007 9 6 1.2813 -2.4770 -0.1347 10 8 0.0645 -2.4829 -0.1366 11 7 1.9609 -3.6344 -0.2570 12 6 1.2348 -4.8995 -0.3918 13 6 2.2348 -6.0512 -0.5126 14 8 2.9757 -6.1683 0.7036 15 6 3.9113 -7.1495 0.7630 16 7 4.0983 -7.9403 -0.2803 17 6 4.9974 -8.9059 -0.2651 18 6 5.7814 -9.1261 0.8500 19 6 5.6134 -8.3212 1.9681 20 6 4.6647 -7.3131 1.9195 21 17 4.4159 -6.2725 3.2864 22 1 -0.4850 0.8400 0.0004 23 1 2.9310 -3.6297 -0.2558 24 1 0.6090 -4.8660 -1.2836 25 1 0.6078 -5.0539 0.4863 26 1 2.9193 -5.8530 -1.3374 27 1 1.6975 -6.9805 -0.7017 28 1 5.1223 -9.5317 -1.1364 29 1 6.5146 -9.9191 0.8537 30 1 6.2110 -8.4750 2.8544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153990557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = -47.310009 kcal Electronic energy + Delta-G solvation = -17537.254653 eV Core-core repulsion = 14358.971949 eV Total energy + Delta-G solvation = -3178.282704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78103 -38.28487 -37.01440 -36.60892 -33.51934 -32.56968 -32.28182 -30.64420 -28.79914 -26.06719 -24.15340 -23.44286 -21.91316 -19.68627 -18.63924 -17.46154 -16.95027 -16.54982 -16.18711 -15.27347 -15.13925 -14.56251 -14.20676 -13.86190 -13.63839 -13.28429 -13.05787 -12.60645 -12.21686 -12.09156 -11.50007 -11.47237 -11.17786 -11.00916 -10.95492 -10.74807 -10.38889 -10.17278 -9.94826 -9.89412 -8.80729 -8.55555 -7.57756 -7.47027 -6.15258 -4.58523 0.72455 0.94816 2.01239 2.91094 3.17164 3.24150 3.28224 3.42655 4.09327 4.14679 4.48314 4.62626 4.64640 4.83713 4.85420 5.04848 5.26065 5.48068 5.53687 5.64975 5.71192 5.81527 6.02503 6.34090 6.46347 7.15494 7.48552 7.53820 7.97649 8.12172 8.38050 9.07300 9.57521 10.64141 10.82689 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.004160 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.092809 B = 6728.923744 C = 7206.605521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.764 5.764 12 C 0.133 3.867 13 C 0.063 3.937 14 O -0.282 6.282 15 C 0.341 3.659 16 N -0.528 5.528 17 C 0.143 3.857 18 C -0.209 4.209 19 C -0.034 4.034 20 C -0.115 4.115 21 Cl -0.037 7.037 22 H 0.268 0.732 23 H 0.382 0.618 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 -17.973 1.787 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.466 6.466 11 N -0.421 5.421 12 C 0.008 3.992 13 C -0.013 4.013 14 O -0.188 6.188 15 C 0.161 3.839 16 N -0.253 5.253 17 C -0.013 4.013 18 C -0.230 4.230 19 C -0.060 4.060 20 C -0.145 4.145 21 Cl -0.009 7.009 22 H 0.078 0.922 23 H 0.214 0.786 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.182 0.818 29 H 0.161 0.839 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.125 -17.420 1.364 20.714 hybrid contribution 1.424 0.571 0.618 1.654 sum 12.549 -16.849 1.982 21.102 Atomic orbital electron populations 1.70029 1.07073 1.27184 1.35453 1.25702 0.94579 1.00256 0.92614 0.86371 0.80284 0.81548 0.78629 1.19828 1.20468 1.18886 1.20885 0.94124 0.89578 1.53607 0.91413 1.18210 0.87109 0.82392 0.76331 1.90593 1.14090 1.86496 1.55418 1.46096 1.08664 1.05384 1.81939 1.20999 0.93089 0.83219 1.01901 1.23136 0.94001 0.99738 0.84385 1.86464 1.46187 1.46500 1.39615 1.19678 0.88159 0.87589 0.88469 1.67587 1.22480 1.07847 1.27338 1.22560 0.88894 0.92158 0.97712 1.21952 1.03837 1.03002 0.94172 1.21395 0.94109 0.91219 0.99302 1.20974 1.02716 0.99847 0.90933 1.98409 1.96126 1.65292 1.41040 0.92172 0.78630 0.90882 0.92244 0.90989 0.90762 0.81839 0.83855 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.51 11.85 55.55 0.66 -22.85 16 2 C 0.09 2.51 5.49 -17.36 -0.10 2.42 16 3 Si 0.91 20.59 29.56 -169.99 -5.03 15.57 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -15.85 9.54 -35.63 -0.34 -16.19 16 8 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 9 C 0.56 16.28 7.74 -12.99 -0.10 16.18 16 10 O -0.58 -19.29 15.05 5.20 0.08 -19.21 16 11 N -0.76 -17.80 5.50 -61.73 -0.34 -18.14 16 12 C 0.13 2.60 6.06 -4.05 -0.02 2.58 16 13 C 0.06 0.96 5.44 37.16 0.20 1.17 16 14 O -0.28 -4.64 9.53 -18.81 -0.18 -4.81 16 15 C 0.34 4.87 7.49 -17.09 -0.13 4.74 16 16 N -0.53 -6.67 9.22 -13.30 -0.12 -6.80 16 17 C 0.14 1.28 11.17 -17.56 -0.20 1.09 16 18 C -0.21 -1.58 10.10 -39.43 -0.40 -1.98 16 19 C -0.03 -0.31 9.97 -39.28 -0.39 -0.70 16 20 C -0.11 -1.45 6.36 -39.20 -0.25 -1.70 16 21 Cl -0.04 -0.51 28.54 -51.86 -1.48 -1.99 16 22 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 23 H 0.38 8.11 8.45 -40.82 -0.34 7.77 16 24 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 27 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -35.99 291.21 -6.59 -42.58 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.85 Total: 3.67 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.72 Total: 7.61 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.20 Total: -47.79 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.10 Total: -24.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -1.99 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.99 -6.59 -42.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153990557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.732 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds