Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48498 * 109.46747 * 274.98108 * 3 2 1 5 5 H 1.48491 * 109.46990 * 34.98318 * 3 2 1 6 6 H 1.48498 * 109.47054 * 154.98615 * 3 2 1 7 7 C 1.40059 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 186.14830 * 7 2 1 9 9 C 1.46371 * 119.99873 * 6.14871 * 7 2 1 10 10 O 1.21685 * 120.00586 * 353.93989 * 9 7 2 11 11 N 1.34777 * 119.99685 * 173.94021 * 9 7 2 12 12 C 1.46492 * 120.00296 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47484 * 180.02562 * 12 11 9 14 14 O 1.42893 * 109.47185 * 65.00261 * 13 12 11 15 15 C 1.35701 * 116.99994 * 179.97438 * 14 13 12 16 16 N 1.32247 * 119.69220 * 0.02562 * 15 14 13 17 17 C 1.31949 * 121.66107 * 179.97438 * 16 15 14 18 18 C 1.38081 * 120.85828 * 359.97438 * 17 16 15 19 19 C 1.38791 * 119.29761 * 0.24771 * 18 17 16 20 20 C 1.38514 * 118.47244 * 359.53551 * 19 18 17 21 21 Cl 1.73593 * 120.45214 * 180.22107 * 20 19 18 22 22 H 0.96996 * 120.00170 * 359.97438 * 1 2 3 23 23 H 0.97008 * 120.00183 * 359.97438 * 11 9 7 24 24 H 1.09003 * 109.46977 * 59.99515 * 12 11 9 25 25 H 1.09000 * 109.47373 * 300.00329 * 12 11 9 26 26 H 1.08992 * 109.47023 * 304.99898 * 13 12 11 27 27 H 1.09002 * 109.46824 * 185.00042 * 13 12 11 28 28 H 1.08001 * 119.57260 * 180.02562 * 17 16 15 29 29 H 1.07995 * 120.35359 * 179.97438 * 18 17 16 30 30 H 1.07995 * 120.76519 * 179.74811 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4120 0.5920 7 6 2.0069 -1.2130 0.0005 8 1 3.0823 -1.2156 0.1007 9 6 1.2813 -2.4770 -0.1347 10 8 0.0645 -2.4829 -0.1366 11 7 1.9609 -3.6344 -0.2570 12 6 1.2348 -4.8995 -0.3918 13 6 2.2348 -6.0512 -0.5126 14 8 2.9757 -6.1683 0.7036 15 6 3.9113 -7.1495 0.7630 16 7 4.0983 -7.9403 -0.2803 17 6 4.9974 -8.9059 -0.2651 18 6 5.7814 -9.1261 0.8500 19 6 5.6134 -8.3212 1.9681 20 6 4.6647 -7.3131 1.9195 21 17 4.4159 -6.2725 3.2864 22 1 -0.4850 0.8400 0.0004 23 1 2.9310 -3.6297 -0.2558 24 1 0.6090 -4.8660 -1.2836 25 1 0.6078 -5.0539 0.4863 26 1 2.9193 -5.8530 -1.3374 27 1 1.6975 -6.9805 -0.7017 28 1 5.1223 -9.5317 -1.1364 29 1 6.5146 -9.9191 0.8537 30 1 6.2110 -8.4750 2.8544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153990557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = -75.829561 kcal Electronic energy + Delta-G solvation = -17538.491353 eV Core-core repulsion = 14358.971949 eV Total energy + Delta-G solvation = -3179.519405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67742 -39.66506 -38.83607 -37.55870 -35.41069 -34.47439 -33.36405 -31.74280 -30.30656 -28.10841 -25.18369 -24.29504 -23.29617 -21.73759 -19.63534 -19.32425 -18.07662 -17.58243 -17.35382 -17.20111 -16.17229 -15.99704 -15.90516 -15.40234 -14.70444 -14.62277 -14.36088 -14.13551 -13.41693 -13.34776 -13.17409 -13.02904 -12.80323 -12.67010 -12.51254 -12.11860 -12.04988 -11.99938 -10.93870 -10.76870 -10.72864 -9.89802 -9.52069 -9.44335 -8.31063 -6.86206 -0.05863 0.16996 1.10380 1.39447 1.40879 1.56985 1.87692 2.24659 2.45933 2.64275 3.08241 3.28298 3.59775 3.69278 3.91122 3.96178 4.11862 4.15676 4.37560 4.44411 4.70343 4.82987 4.89036 5.04071 5.31444 5.40048 5.85848 6.10403 6.19203 6.24911 6.72012 6.85753 7.49984 8.46597 8.65770 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.004160 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.092809 B = 6728.923744 C = 7206.605521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.752 5.752 12 C 0.134 3.866 13 C 0.083 3.917 14 O -0.310 6.310 15 C 0.310 3.690 16 N -0.546 5.546 17 C 0.136 3.864 18 C -0.186 4.186 19 C -0.031 4.031 20 C -0.134 4.134 21 Cl -0.060 7.060 22 H 0.275 0.725 23 H 0.393 0.607 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.200 0.800 29 H 0.188 0.812 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.855 -19.140 1.381 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.102 0.898 9 C 0.342 3.658 10 O -0.520 6.520 11 N -0.407 5.407 12 C 0.009 3.991 13 C 0.007 3.993 14 O -0.217 6.217 15 C 0.131 3.869 16 N -0.271 5.271 17 C -0.019 4.019 18 C -0.205 4.205 19 C -0.057 4.057 20 C -0.163 4.163 21 Cl -0.031 7.031 22 H 0.085 0.915 23 H 0.226 0.774 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.217 0.783 29 H 0.205 0.795 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.159 -18.651 0.954 23.436 hybrid contribution 0.590 0.709 0.729 1.176 sum 14.749 -17.942 1.683 23.287 Atomic orbital electron populations 1.70186 1.09543 1.29012 1.36305 1.26982 0.95526 1.04936 0.91129 0.84993 0.78824 0.75068 0.79304 1.18513 1.19571 1.17383 1.21413 0.95119 0.90385 1.54213 0.89767 1.18601 0.86776 0.84241 0.76151 1.90543 1.16082 1.87608 1.57780 1.45777 1.09170 1.05427 1.80333 1.21072 0.94005 0.83170 1.00847 1.22812 0.93369 0.98387 0.84693 1.86382 1.47432 1.48278 1.39652 1.19827 0.88899 0.88337 0.89858 1.67571 1.23893 1.08693 1.26965 1.23307 0.87802 0.91262 0.99533 1.22459 1.03087 1.02538 0.92448 1.21834 0.92987 0.89911 1.00958 1.21232 1.04124 1.00982 0.90007 1.98394 1.96375 1.66304 1.42039 0.91479 0.77363 0.91068 0.94264 0.90231 0.88774 0.78305 0.79464 0.80665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.54 11.85 21.84 0.26 -51.28 16 2 C 0.03 1.69 5.49 85.31 0.47 2.16 16 3 Si 1.00 42.16 29.56 68.60 2.03 44.19 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.57 -33.98 9.54 24.83 0.24 -33.75 16 8 H 0.08 4.53 7.85 -2.91 -0.02 4.50 16 9 C 0.54 32.69 7.74 86.36 0.67 33.35 16 10 O -0.63 -43.85 15.05 -4.30 -0.06 -43.91 16 11 N -0.75 -36.14 5.50 -467.43 -2.57 -38.71 16 12 C 0.13 5.43 6.06 86.38 0.52 5.95 16 13 C 0.08 2.56 5.44 71.98 0.39 2.95 16 14 O -0.31 -10.36 9.53 -90.21 -0.86 -11.22 16 15 C 0.31 8.65 7.49 84.81 0.63 9.29 16 16 N -0.55 -12.83 9.22 -308.84 -2.85 -15.68 16 17 C 0.14 1.96 11.17 84.64 0.95 2.90 16 18 C -0.19 -1.97 10.10 22.36 0.23 -1.74 16 19 C -0.03 -0.47 9.97 22.47 0.22 -0.25 16 20 C -0.13 -3.25 6.36 22.52 0.14 -3.10 16 21 Cl -0.06 -1.63 28.54 -2.72 -0.08 -1.71 16 22 H 0.28 15.56 8.29 -92.71 -0.77 14.79 16 23 H 0.39 17.03 8.45 -92.70 -0.78 16.24 16 24 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 27 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 28 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 29 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 30 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -82.25 291.21 0.73 -81.52 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.40 Total: 19.04 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 4.46 Total: 17.77 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -5.16 Total: -105.67 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.92 Total: -55.14 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -82.25 0.73 -81.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153990557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.692 kcal (2) G-P(sol) polarization free energy of solvation -82.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds