Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48503 * 109.47403 * 269.99883 * 3 2 1 5 5 H 1.48498 * 109.47350 * 30.00084 * 3 2 1 6 6 H 1.48504 * 109.47008 * 149.99746 * 3 2 1 7 7 C 1.40043 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00168 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99884 * 179.97438 * 9 7 2 12 12 C 1.46498 * 120.00000 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47465 * 180.02562 * 12 11 9 14 14 O 1.42903 * 109.46726 * 65.00068 * 13 12 11 15 15 C 1.35698 * 116.99730 * 180.02562 * 14 13 12 16 16 C 1.38909 * 119.66986 * 179.72823 * 15 14 13 17 17 C 1.38380 * 119.12449 * 179.79200 * 16 15 14 18 18 C 1.38922 * 118.47248 * 0.47699 * 17 16 15 19 19 Cl 1.73604 * 120.36627 * 179.77280 * 18 17 16 20 20 C 1.38146 * 119.26547 * 359.74036 * 18 17 16 21 21 N 1.31967 * 120.81663 * 0.03080 * 20 18 17 22 22 H 0.97002 * 120.00269 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00357 * 0.02562 * 11 9 7 24 24 H 1.09002 * 109.47131 * 60.00453 * 12 11 9 25 25 H 1.09002 * 109.47421 * 300.00408 * 12 11 9 26 26 H 1.09002 * 109.47398 * 185.00312 * 13 12 11 27 27 H 1.09001 * 109.47194 * 305.00492 * 13 12 11 28 28 H 1.08000 * 120.44114 * 0.02562 * 16 15 14 29 29 H 1.08000 * 120.76600 * 180.22144 * 17 16 15 30 30 H 1.08001 * 119.59108 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5382 1.4402 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2165 -4.9164 0.0011 13 6 2.2107 -6.0793 0.0016 14 8 2.9530 -6.0708 1.2227 15 6 3.8846 -7.0441 1.3841 16 6 4.6421 -7.0848 2.5478 17 6 5.5860 -8.0848 2.7024 18 6 5.7466 -9.0082 1.6770 19 17 6.9205 -10.2795 1.8168 20 6 4.9613 -8.9040 0.5453 21 7 4.0662 -7.9412 0.4297 22 1 -0.4851 0.8400 -0.0004 23 1 2.9190 -3.6477 0.0009 24 1 0.5896 -4.9743 -0.8887 25 1 0.5901 -4.9739 0.8913 26 1 1.6687 -7.0208 -0.0876 27 1 2.8949 -5.9728 -0.8402 28 1 4.4937 -6.3479 3.3233 29 1 6.1869 -8.1436 3.5979 30 1 5.0815 -9.6193 -0.2549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153990781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = -50.077302 kcal Electronic energy + Delta-G solvation = -17233.010910 eV Core-core repulsion = 14054.608207 eV Total energy + Delta-G solvation = -3178.402703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83370 -38.39178 -37.13780 -36.68696 -33.54874 -32.80947 -32.31318 -30.58754 -28.82320 -26.10225 -24.29024 -23.40605 -21.98459 -19.73441 -18.66025 -17.49899 -17.01321 -16.73467 -16.17986 -15.29842 -14.96867 -14.61515 -14.28232 -13.89951 -13.67255 -13.54042 -13.11093 -12.76259 -12.32424 -12.16451 -11.60333 -11.49038 -11.36892 -11.04797 -10.96007 -10.73495 -10.43635 -10.21635 -10.20270 -9.93234 -8.84496 -8.60372 -7.62258 -7.52144 -6.17843 -4.63007 0.74373 0.84553 1.76623 2.95232 3.15050 3.21750 3.25399 3.38965 3.99674 4.11445 4.41802 4.59737 4.64280 4.74463 4.80623 5.21870 5.35566 5.40178 5.45104 5.61768 5.63293 5.78188 5.95520 6.31172 6.41657 7.12473 7.44543 7.50582 7.92867 8.07398 8.33363 9.03510 9.53043 10.60620 10.78939 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037158 B = 0.003151 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.361508 B = 8884.593204 C = 9372.113772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.766 5.766 12 C 0.132 3.868 13 C 0.062 3.938 14 O -0.289 6.289 15 C 0.335 3.665 16 C -0.179 4.179 17 C -0.031 4.031 18 C -0.137 4.137 19 Cl -0.061 7.061 20 C 0.157 3.843 21 N -0.528 5.528 22 H 0.268 0.732 23 H 0.382 0.618 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.754 -17.660 3.645 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.465 6.465 11 N -0.422 5.422 12 C 0.007 3.993 13 C -0.013 4.013 14 O -0.195 6.195 15 C 0.156 3.844 16 C -0.200 4.200 17 C -0.057 4.057 18 C -0.167 4.167 19 Cl -0.033 7.033 20 C 0.000 4.000 21 N -0.252 5.252 22 H 0.079 0.921 23 H 0.214 0.786 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.130 -17.363 3.077 20.852 hybrid contribution 1.518 0.459 0.552 1.679 sum 12.648 -16.904 3.629 21.421 Atomic orbital electron populations 1.70022 1.07062 1.27252 1.35414 1.25711 0.94622 1.00301 0.92619 0.86368 0.80154 0.81381 0.78811 1.19754 1.20460 1.18912 1.20878 0.93589 0.89379 1.54316 0.91442 1.18218 0.87183 0.82430 0.76290 1.90597 1.14088 1.86861 1.54985 1.46110 1.08635 1.04611 1.82861 1.21012 0.93108 0.83166 1.02004 1.23138 0.94020 0.99971 0.84176 1.86408 1.46690 1.45181 1.41232 1.20075 0.87944 0.86637 0.89745 1.21159 0.98216 1.02006 0.98619 1.21325 0.95444 0.91125 0.97802 1.21788 0.99411 0.96401 0.99088 1.98368 1.56929 1.49980 1.98024 1.22390 0.88533 0.93883 0.95160 1.67563 1.21606 1.05556 1.30482 0.92114 0.78647 0.90857 0.92244 0.90725 0.90967 0.82902 0.83220 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.26 29.56 -169.99 -5.02 15.23 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.56 9.54 -35.63 -0.34 -15.90 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 15.97 7.75 -12.99 -0.10 15.87 16 10 O -0.58 -19.02 15.02 5.20 0.08 -18.94 16 11 N -0.77 -17.35 5.50 -61.72 -0.34 -17.69 16 12 C 0.13 2.51 6.06 -4.04 -0.02 2.48 16 13 C 0.06 0.92 5.44 37.16 0.20 1.12 16 14 O -0.29 -4.43 10.06 -18.80 -0.19 -4.62 16 15 C 0.34 4.43 7.49 -17.13 -0.13 4.30 16 16 C -0.18 -1.92 10.04 -39.28 -0.39 -2.32 16 17 C -0.03 -0.28 9.97 -39.28 -0.39 -0.67 16 18 C -0.14 -1.27 6.34 -39.36 -0.25 -1.52 16 19 Cl -0.06 -0.50 28.99 -51.86 -1.50 -2.00 16 20 C 0.16 1.58 10.97 -17.53 -0.19 1.39 16 21 N -0.53 -6.61 9.21 -13.30 -0.12 -6.74 16 22 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 23 H 0.38 7.81 8.45 -40.82 -0.34 7.46 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 27 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 28 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -34.65 291.85 -6.61 -41.26 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.85 Total: 4.58 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.71 Total: 7.11 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.20 Total: -47.02 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.11 Total: -23.56 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.65 -6.61 -41.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153990781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.820 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds