Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48503 * 109.47403 * 269.99883 * 3 2 1 5 5 H 1.48498 * 109.47350 * 30.00084 * 3 2 1 6 6 H 1.48504 * 109.47008 * 149.99746 * 3 2 1 7 7 C 1.40043 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00168 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99884 * 179.97438 * 9 7 2 12 12 C 1.46498 * 120.00000 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47465 * 180.02562 * 12 11 9 14 14 O 1.42903 * 109.46726 * 65.00068 * 13 12 11 15 15 C 1.35698 * 116.99730 * 180.02562 * 14 13 12 16 16 C 1.38909 * 119.66986 * 179.72823 * 15 14 13 17 17 C 1.38380 * 119.12449 * 179.79200 * 16 15 14 18 18 C 1.38922 * 118.47248 * 0.47699 * 17 16 15 19 19 Cl 1.73604 * 120.36627 * 179.77280 * 18 17 16 20 20 C 1.38146 * 119.26547 * 359.74036 * 18 17 16 21 21 N 1.31967 * 120.81663 * 0.03080 * 20 18 17 22 22 H 0.97002 * 120.00269 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00357 * 0.02562 * 11 9 7 24 24 H 1.09002 * 109.47131 * 60.00453 * 12 11 9 25 25 H 1.09002 * 109.47421 * 300.00408 * 12 11 9 26 26 H 1.09002 * 109.47398 * 185.00312 * 13 12 11 27 27 H 1.09001 * 109.47194 * 305.00492 * 13 12 11 28 28 H 1.08000 * 120.44114 * 0.02562 * 16 15 14 29 29 H 1.08000 * 120.76600 * 180.22144 * 17 16 15 30 30 H 1.08001 * 119.59108 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5382 1.4402 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2165 -4.9164 0.0011 13 6 2.2107 -6.0793 0.0016 14 8 2.9530 -6.0708 1.2227 15 6 3.8846 -7.0441 1.3841 16 6 4.6421 -7.0848 2.5478 17 6 5.5860 -8.0848 2.7024 18 6 5.7466 -9.0082 1.6770 19 17 6.9205 -10.2795 1.8168 20 6 4.9613 -8.9040 0.5453 21 7 4.0662 -7.9412 0.4297 22 1 -0.4851 0.8400 -0.0004 23 1 2.9190 -3.6477 0.0009 24 1 0.5896 -4.9743 -0.8887 25 1 0.5901 -4.9739 0.8913 26 1 1.6687 -7.0208 -0.0876 27 1 2.8949 -5.9728 -0.8402 28 1 4.4937 -6.3479 3.3233 29 1 6.1869 -8.1436 3.5979 30 1 5.0815 -9.6193 -0.2549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153990781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = -76.868502 kcal Electronic energy + Delta-G solvation = -17234.172664 eV Core-core repulsion = 14054.608207 eV Total energy + Delta-G solvation = -3179.564456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72908 -39.69424 -38.90652 -37.47327 -35.39729 -34.46456 -33.61071 -31.69218 -30.29410 -28.10250 -25.27257 -24.32548 -23.32970 -21.74118 -19.64185 -19.32417 -18.08675 -17.59000 -17.53684 -17.19667 -16.16174 -15.92564 -15.84515 -15.38324 -14.76303 -14.74279 -14.35978 -14.19042 -13.57733 -13.44605 -13.24839 -12.94247 -12.74572 -12.65216 -12.48777 -12.23887 -12.00901 -11.90088 -10.97983 -10.93422 -10.77306 -9.89690 -9.52055 -9.46022 -8.29645 -6.86211 -0.08103 0.07383 1.03168 1.40796 1.42444 1.57917 1.93313 2.25277 2.46762 2.55905 3.08370 3.16293 3.61418 3.71823 3.79888 3.89321 4.01883 4.15929 4.39013 4.54791 4.66005 4.74852 4.85204 4.89018 5.22071 5.31785 5.86171 6.10430 6.19893 6.24999 6.64348 6.86317 7.51058 8.47403 8.66572 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037158 B = 0.003151 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.361508 B = 8884.593204 C = 9372.113772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.753 5.753 12 C 0.133 3.867 13 C 0.081 3.919 14 O -0.312 6.312 15 C 0.308 3.692 16 C -0.183 4.183 17 C -0.023 4.023 18 C -0.133 4.133 19 Cl -0.047 7.047 20 C 0.150 3.850 21 N -0.544 5.544 22 H 0.275 0.725 23 H 0.394 0.606 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.179 0.821 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 -18.067 4.019 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.610 4.610 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.520 6.520 11 N -0.408 5.408 12 C 0.008 3.992 13 C 0.006 3.994 14 O -0.219 6.219 15 C 0.130 3.870 16 C -0.204 4.204 17 C -0.048 4.048 18 C -0.162 4.162 19 Cl -0.018 7.018 20 C -0.007 4.007 21 N -0.269 5.269 22 H 0.085 0.915 23 H 0.228 0.772 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.179 0.821 29 H 0.197 0.803 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.796 -17.837 3.452 22.812 hybrid contribution 0.791 0.399 0.468 1.002 sum 14.587 -17.438 3.920 23.070 Atomic orbital electron populations 1.70185 1.09549 1.29012 1.36420 1.26998 0.95557 1.05019 0.91169 0.84992 0.78721 0.74935 0.79457 1.18530 1.19722 1.17269 1.21425 0.94707 0.90121 1.54749 0.89560 1.18607 0.86827 0.84335 0.76048 1.90549 1.16138 1.87981 1.57357 1.45782 1.09232 1.04603 1.81211 1.21084 0.93983 0.83103 1.01026 1.22818 0.93427 0.98487 0.84650 1.86338 1.47744 1.46702 1.41108 1.20289 0.88594 0.87050 0.91086 1.21341 0.98213 1.02766 0.98058 1.21649 0.94685 0.89930 0.98572 1.21898 0.99074 0.96468 0.98792 1.98381 1.56224 1.49260 1.97956 1.22780 0.88062 0.93644 0.96174 1.67502 1.22582 1.06091 1.30707 0.91502 0.77232 0.91214 0.93982 0.88816 0.90307 0.82064 0.80332 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.90 11.83 21.83 0.26 -50.64 16 2 C 0.03 1.55 5.50 85.30 0.47 2.02 16 3 Si 1.00 41.23 29.56 68.60 2.03 43.26 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 7 C -0.57 -33.05 9.54 24.83 0.24 -32.81 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.54 31.83 7.75 86.36 0.67 32.50 16 10 O -0.63 -43.07 15.02 -4.30 -0.06 -43.13 16 11 N -0.75 -34.80 5.50 -467.41 -2.57 -37.37 16 12 C 0.13 5.16 6.06 86.38 0.52 5.68 16 13 C 0.08 2.39 5.44 71.98 0.39 2.78 16 14 O -0.31 -9.49 10.06 -90.18 -0.91 -10.40 16 15 C 0.31 7.88 7.49 84.79 0.63 8.52 16 16 C -0.18 -3.66 10.04 22.46 0.23 -3.44 16 17 C -0.02 -0.35 9.97 22.47 0.22 -0.12 16 18 C -0.13 -2.14 6.34 22.41 0.14 -1.99 16 19 Cl -0.05 -0.64 28.99 -2.72 -0.08 -0.72 16 20 C 0.15 2.72 10.97 84.65 0.93 3.65 16 21 N -0.54 -12.97 9.21 -308.87 -2.85 -15.81 16 22 H 0.28 15.36 8.29 -92.71 -0.77 14.59 16 23 H 0.39 16.16 8.45 -92.71 -0.78 15.38 16 24 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 27 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 28 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.91 291.85 0.66 -76.25 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.40 Total: 21.78 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 4.45 Total: 16.79 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.16 Total: -103.82 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.97 Total: -53.54 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -76.91 0.66 -76.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153990781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.622 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds