Wall clock time and date at job start Mon Mar 30 2020 00:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48504 * 109.47019 * 264.99762 * 3 2 1 5 5 H 1.48498 * 109.47331 * 24.99579 * 3 2 1 6 6 H 1.48493 * 109.47104 * 145.00054 * 3 2 1 7 7 C 1.37876 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 7.45448 * 7 2 1 9 9 C 1.50703 * 119.99766 * 187.45904 * 7 2 1 10 10 C 1.52994 * 115.55111 * 90.97929 * 9 7 2 11 11 O 1.42900 * 109.47378 * 304.80842 * 10 9 7 12 12 C 1.35913 * 117.00596 * 180.02562 * 11 10 9 13 13 C 1.38752 * 120.02831 * 4.90976 * 12 11 10 14 14 C 1.38144 * 120.00666 * 179.79140 * 13 12 11 15 15 C 1.38331 * 120.06592 * 0.46641 * 14 13 12 16 16 Cl 1.73603 * 119.97132 * 179.76689 * 15 14 13 17 17 C 1.38567 * 120.05995 * 359.78746 * 15 14 13 18 18 F 1.35108 * 120.00047 * 179.97438 * 17 15 14 19 19 C 1.38373 * 119.99812 * 359.97438 * 17 15 14 20 20 C 1.53000 * 117.49801 * 305.26886 * 9 7 2 21 21 C 1.52997 * 60.00313 * 252.51561 * 20 9 7 22 22 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47360 * 64.81051 * 10 9 7 24 24 H 1.09001 * 109.46777 * 184.81242 * 10 9 7 25 25 H 1.08005 * 120.00018 * 0.02562 * 13 12 11 26 26 H 1.08000 * 119.96745 * 180.23078 * 14 13 12 27 27 H 1.07999 * 120.03550 * 180.02562 * 19 17 15 28 28 H 1.09007 * 117.49631 * 0.02562 * 20 9 7 29 29 H 1.08996 * 117.50163 * 145.02121 * 20 9 7 30 30 H 1.08999 * 117.50138 * 252.51592 * 21 20 9 31 31 H 1.09003 * 117.52267 * 107.47920 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3977 2.6809 0.5916 6 1 3.4898 1.4731 0.8030 7 6 2.0046 -1.1940 0.0005 8 1 1.4714 -2.1254 -0.1204 9 6 3.5021 -1.1994 0.1700 10 6 4.0027 -1.3143 1.6111 11 8 3.4256 -0.2721 2.4004 12 6 3.7700 -0.2304 3.7145 13 6 4.7224 -1.1089 4.2109 14 6 5.0753 -1.0632 5.5458 15 6 4.4729 -0.1486 6.3909 16 17 4.9138 -0.0975 8.0692 17 6 3.5177 0.7264 5.8992 18 9 2.9298 1.6189 6.7259 19 6 3.1658 0.6862 4.5616 20 6 4.3257 -0.3485 -0.7988 21 6 4.3342 -1.8734 -0.9229 22 1 -0.4850 0.8400 -0.0004 23 1 3.7135 -2.2823 2.0202 24 1 5.0887 -1.2229 1.6268 25 1 5.1907 -1.8260 3.5529 26 1 5.8194 -1.7448 5.9307 27 1 2.4217 1.3683 4.1776 28 1 3.7843 0.2155 -1.5584 29 1 5.2244 0.1298 -0.4095 30 1 5.2385 -2.3984 -0.6151 31 1 3.7985 -2.3133 -1.7641 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156274866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:35 Heat of formation + Delta-G solvation = -33.613422 kcal Electronic energy + Delta-G solvation = -18141.084314 eV Core-core repulsion = 14943.475577 eV Total energy + Delta-G solvation = -3197.608737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.94329 -39.94053 -37.77539 -36.65000 -35.84675 -32.11304 -30.97385 -29.56695 -27.08977 -25.43656 -23.07694 -22.27990 -21.73794 -19.19062 -18.38913 -17.00425 -16.53893 -16.26633 -15.93685 -15.79891 -15.16191 -14.76768 -14.37703 -13.94230 -13.56619 -12.96681 -12.86735 -12.67813 -12.50578 -12.22229 -11.72622 -11.38810 -11.22559 -10.94406 -10.84775 -10.52956 -10.34499 -10.20040 -9.46675 -9.22621 -8.97006 -8.73488 -8.46694 -8.02175 -6.12482 -4.18278 1.03568 1.15628 2.04455 3.19943 3.40326 3.47029 3.52453 3.58099 4.19835 4.47878 4.67012 4.79207 4.93252 5.13915 5.19694 5.33175 5.46407 5.70121 5.74829 5.78914 5.83794 5.94830 6.02954 6.12590 6.29258 6.31383 6.54597 6.58604 6.83766 6.94739 7.61635 7.79245 8.41914 8.87552 9.51900 10.98455 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.005549 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.056238 B = 5044.965430 C = 5671.805850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.090 3.910 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.496 4.496 8 H 0.078 0.922 9 C -0.001 4.001 10 C 0.096 3.904 11 O -0.269 6.269 12 C 0.183 3.817 13 C -0.216 4.216 14 C -0.040 4.040 15 C -0.127 4.127 16 Cl -0.065 7.065 17 C 0.151 3.849 18 F -0.126 7.126 19 C -0.187 4.187 20 C -0.202 4.202 21 C -0.168 4.168 22 H 0.265 0.735 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 -1.041 10.076 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.114 4.114 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.168 1.168 7 C -0.533 4.533 8 H 0.096 0.904 9 C -0.002 4.002 10 C 0.021 3.979 11 O -0.180 6.180 12 C 0.134 3.866 13 C -0.235 4.235 14 C -0.059 4.059 15 C -0.155 4.155 16 Cl -0.036 7.036 17 C 0.131 3.869 18 F -0.104 7.104 19 C -0.207 4.207 20 C -0.239 4.239 21 C -0.205 4.205 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.095 -0.773 10.124 15.040 hybrid contribution 0.399 0.951 0.263 1.065 sum 11.495 0.179 10.387 15.494 Atomic orbital electron populations 1.69909 1.06580 1.27352 1.49127 1.24929 0.94445 0.99178 0.92832 0.86828 0.81175 0.82850 0.77981 1.21256 1.22674 1.16762 1.20106 0.86648 0.94833 1.51667 0.90450 1.19316 0.95109 1.00645 0.85161 1.22716 0.94324 0.88568 0.92304 1.86458 1.65943 1.50665 1.14932 1.18973 0.90405 0.91731 0.85518 1.21343 1.02296 1.03608 0.96297 1.20653 0.97592 0.95683 0.91974 1.20664 1.04071 1.03655 0.87089 1.98348 1.92227 1.98191 1.14865 1.16937 0.93356 0.89088 0.87552 1.91532 1.82317 1.65475 1.71075 1.20298 1.05706 1.04259 0.90428 1.23054 1.02002 0.93562 1.05324 1.22877 1.00841 0.94508 1.02322 0.92512 0.91801 0.93888 0.83875 0.84072 0.83072 0.89146 0.90629 0.90754 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.09 2.52 5.44 -17.82 -0.10 2.43 16 3 Si 0.88 21.72 23.58 -169.99 -4.01 17.71 16 4 H -0.29 -6.90 6.89 56.52 0.39 -6.51 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.24 -5.67 5.58 56.52 0.32 -5.36 16 7 C -0.50 -13.30 9.21 -34.44 -0.32 -13.61 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 C 0.00 -0.03 1.41 -155.66 -0.22 -0.25 16 10 C 0.10 1.78 4.64 37.15 0.17 1.96 16 11 O -0.27 -5.50 7.44 -19.47 -0.14 -5.65 16 12 C 0.18 3.13 6.68 -39.23 -0.26 2.87 16 13 C -0.22 -2.99 9.05 -39.43 -0.36 -3.34 16 14 C -0.04 -0.50 9.82 -39.58 -0.39 -0.88 16 15 C -0.13 -1.75 6.33 -39.43 -0.25 -2.00 16 16 Cl -0.06 -0.80 28.61 -51.86 -1.48 -2.29 16 17 C 0.15 2.31 7.27 -39.41 -0.29 2.02 16 18 F -0.13 -1.93 16.83 2.25 0.04 -1.90 16 19 C -0.19 -3.12 9.96 -39.37 -0.39 -3.51 16 20 C -0.20 -4.05 7.16 -26.73 -0.19 -4.24 16 21 C -0.17 -3.08 9.95 -26.73 -0.27 -3.34 16 22 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 24 H 0.04 0.67 7.40 -51.93 -0.38 0.29 16 25 H 0.14 1.70 6.30 -52.48 -0.33 1.37 16 26 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 28 H 0.09 1.95 6.13 -51.92 -0.32 1.63 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 281.54 15.07 4.24 4.24 Total: -1.00 -29.16 281.54 -6.65 -35.81 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.21 Total: 0.01 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.86 Total: -21.91 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.14 Total: -5.65 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.01 Total: 17.71 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.16 -6.65 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156274866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.197 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds