Wall clock time and date at job start Mon Mar 30 2020 00:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48504 * 109.47019 * 264.99762 * 3 2 1 5 5 H 1.48498 * 109.47331 * 24.99579 * 3 2 1 6 6 H 1.48493 * 109.47104 * 145.00054 * 3 2 1 7 7 C 1.37876 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 7.45448 * 7 2 1 9 9 C 1.50703 * 119.99766 * 187.45904 * 7 2 1 10 10 C 1.52994 * 115.55111 * 90.97929 * 9 7 2 11 11 O 1.42900 * 109.47378 * 304.80842 * 10 9 7 12 12 C 1.35913 * 117.00596 * 180.02562 * 11 10 9 13 13 C 1.38752 * 120.02831 * 4.90976 * 12 11 10 14 14 C 1.38144 * 120.00666 * 179.79140 * 13 12 11 15 15 C 1.38331 * 120.06592 * 0.46641 * 14 13 12 16 16 Cl 1.73603 * 119.97132 * 179.76689 * 15 14 13 17 17 C 1.38567 * 120.05995 * 359.78746 * 15 14 13 18 18 F 1.35108 * 120.00047 * 179.97438 * 17 15 14 19 19 C 1.38373 * 119.99812 * 359.97438 * 17 15 14 20 20 C 1.53000 * 117.49801 * 305.26886 * 9 7 2 21 21 C 1.52997 * 60.00313 * 252.51561 * 20 9 7 22 22 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47360 * 64.81051 * 10 9 7 24 24 H 1.09001 * 109.46777 * 184.81242 * 10 9 7 25 25 H 1.08005 * 120.00018 * 0.02562 * 13 12 11 26 26 H 1.08000 * 119.96745 * 180.23078 * 14 13 12 27 27 H 1.07999 * 120.03550 * 180.02562 * 19 17 15 28 28 H 1.09007 * 117.49631 * 0.02562 * 20 9 7 29 29 H 1.08996 * 117.50163 * 145.02121 * 20 9 7 30 30 H 1.08999 * 117.50138 * 252.51592 * 21 20 9 31 31 H 1.09003 * 117.52267 * 107.47920 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3977 2.6809 0.5916 6 1 3.4898 1.4731 0.8030 7 6 2.0046 -1.1940 0.0005 8 1 1.4714 -2.1254 -0.1204 9 6 3.5021 -1.1994 0.1700 10 6 4.0027 -1.3143 1.6111 11 8 3.4256 -0.2721 2.4004 12 6 3.7700 -0.2304 3.7145 13 6 4.7224 -1.1089 4.2109 14 6 5.0753 -1.0632 5.5458 15 6 4.4729 -0.1486 6.3909 16 17 4.9138 -0.0975 8.0692 17 6 3.5177 0.7264 5.8992 18 9 2.9298 1.6189 6.7259 19 6 3.1658 0.6862 4.5616 20 6 4.3257 -0.3485 -0.7988 21 6 4.3342 -1.8734 -0.9229 22 1 -0.4850 0.8400 -0.0004 23 1 3.7135 -2.2823 2.0202 24 1 5.0887 -1.2229 1.6268 25 1 5.1907 -1.8260 3.5529 26 1 5.8194 -1.7448 5.9307 27 1 2.4217 1.3683 4.1776 28 1 3.7843 0.2155 -1.5584 29 1 5.2244 0.1298 -0.4095 30 1 5.2385 -2.3984 -0.6151 31 1 3.7985 -2.3133 -1.7641 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156274866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:35 Heat of formation + Delta-G solvation = -50.523912 kcal Electronic energy + Delta-G solvation = -18141.817608 eV Core-core repulsion = 14943.475577 eV Total energy + Delta-G solvation = -3198.342031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.12758 -41.18721 -39.11073 -37.93231 -37.07532 -34.21688 -32.10158 -30.73054 -28.56542 -27.35514 -24.21574 -23.59837 -23.12894 -20.90487 -19.60382 -18.64529 -17.77004 -17.61876 -17.15931 -17.05103 -16.78169 -16.31956 -15.86194 -15.02438 -14.95547 -14.72586 -14.29466 -13.99491 -13.89473 -13.39410 -13.20080 -12.88672 -12.75903 -12.51131 -12.06175 -12.01225 -11.93028 -11.57636 -11.33170 -10.97408 -10.64370 -10.24821 -10.07875 -9.21567 -8.28486 -6.35223 -0.09510 0.03415 0.98566 1.32037 1.42639 1.58311 2.12663 2.37436 2.43060 3.04113 3.09605 3.29910 3.59262 3.84920 4.01668 4.08770 4.20269 4.27684 4.39485 4.45155 4.57878 4.67593 4.83158 4.86921 4.93058 5.06378 5.13105 5.29499 5.43874 5.49735 5.70497 6.26874 6.46760 6.75374 7.38074 8.86550 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.005549 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.056238 B = 5044.965430 C = 5671.805850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.035 3.965 3 Si 0.937 3.063 4 H -0.279 1.279 5 H -0.315 1.315 6 H -0.218 1.218 7 C -0.489 4.489 8 H 0.033 0.967 9 C -0.038 4.038 10 C 0.099 3.901 11 O -0.309 6.309 12 C 0.158 3.842 13 C -0.202 4.202 14 C -0.026 4.026 15 C -0.125 4.125 16 Cl -0.050 7.050 17 C 0.140 3.860 18 F -0.131 7.131 19 C -0.207 4.207 20 C -0.203 4.203 21 C -0.141 4.141 22 H 0.262 0.738 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.171 0.829 26 H 0.181 0.819 27 H 0.134 0.866 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.271 -1.877 11.140 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.244 1.244 6 H -0.140 1.140 7 C -0.526 4.526 8 H 0.051 0.949 9 C -0.039 4.039 10 C 0.025 3.975 11 O -0.221 6.221 12 C 0.111 3.889 13 C -0.221 4.221 14 C -0.044 4.044 15 C -0.153 4.153 16 Cl -0.022 7.022 17 C 0.120 3.880 18 F -0.110 7.110 19 C -0.227 4.227 20 C -0.240 4.240 21 C -0.178 4.178 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.188 0.812 26 H 0.198 0.802 27 H 0.152 0.848 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.011 -1.627 11.194 18.796 hybrid contribution -0.815 1.095 -0.001 1.365 sum 14.196 -0.532 11.193 18.085 Atomic orbital electron populations 1.70060 1.08494 1.27816 1.52520 1.25701 0.94888 1.02619 0.93093 0.85963 0.80698 0.78526 0.78353 1.20544 1.24373 1.14048 1.20377 0.90097 0.92706 1.49439 0.94869 1.19330 0.92185 1.04223 0.88119 1.22649 0.96432 0.88650 0.89783 1.86368 1.67443 1.51656 1.16646 1.19146 0.92084 0.93220 0.84490 1.21610 1.00708 1.02607 0.97186 1.21069 0.97237 0.95069 0.91047 1.20865 1.03227 1.03101 0.88102 1.98359 1.91957 1.98127 1.13726 1.17016 0.94170 0.89737 0.87109 1.91513 1.82585 1.65823 1.71061 1.20291 1.06190 1.04844 0.91362 1.23082 1.02233 0.94750 1.03922 1.22952 1.01225 0.93689 0.99966 0.92927 0.91187 0.89611 0.81187 0.80177 0.84820 0.91342 0.87605 0.86137 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.03 2.03 5.44 84.65 0.46 2.49 16 3 Si 0.94 45.75 23.58 68.60 1.62 47.36 16 4 H -0.28 -13.10 6.89 99.48 0.69 -12.42 16 5 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 6 H -0.22 -9.64 5.58 99.48 0.55 -9.09 16 7 C -0.49 -26.87 9.21 25.60 0.24 -26.64 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 9 C -0.04 -1.56 1.41 -52.93 -0.07 -1.63 16 10 C 0.10 3.37 4.64 71.98 0.33 3.71 16 11 O -0.31 -12.16 7.44 -92.58 -0.69 -12.85 16 12 C 0.16 5.15 6.68 22.49 0.15 5.30 16 13 C -0.20 -4.78 9.05 22.37 0.20 -4.58 16 14 C -0.03 -0.53 9.82 22.27 0.22 -0.31 16 15 C -0.13 -3.09 6.33 22.37 0.14 -2.95 16 16 Cl -0.05 -1.11 28.61 -2.72 -0.08 -1.19 16 17 C 0.14 4.15 7.27 22.38 0.16 4.31 16 18 F -0.13 -4.01 16.83 44.97 0.76 -3.25 16 19 C -0.21 -6.89 9.96 22.40 0.22 -6.66 16 20 C -0.20 -7.46 7.16 30.59 0.22 -7.25 16 21 C -0.14 -4.67 9.95 30.60 0.30 -4.36 16 22 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 23 H 0.07 2.23 7.87 -2.39 -0.02 2.21 16 24 H 0.09 2.18 7.40 -2.39 -0.02 2.16 16 25 H 0.17 3.06 6.30 -2.91 -0.02 3.05 16 26 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 27 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 28 H 0.07 2.82 6.13 -2.38 -0.01 2.81 16 29 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.12 2.91 8.14 -2.39 -0.02 2.90 16 31 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -67.17 281.54 5.46 -61.70 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.98 Total: 6.46 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.58 Total: -38.57 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.30 Total: -59.67 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.69 Total: -12.85 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.76 Total: -3.25 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.62 Total: 47.36 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -67.17 5.46 -61.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156274866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.179 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds