Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47019 * 269.99730 * 3 2 1 5 5 H 1.48501 * 109.47362 * 29.99528 * 3 2 1 6 6 H 1.48501 * 109.47546 * 149.99786 * 3 2 1 7 7 C 1.37873 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47526 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47502 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.81397 * 102.99921 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47152 * 180.02562 * 13 12 11 15 15 C 1.38270 * 119.99101 * 270.27576 * 14 13 12 16 16 C 1.38215 * 120.02537 * 180.27948 * 15 14 13 17 17 C 1.38238 * 120.01126 * 359.44038 * 16 15 14 18 18 C 1.38325 * 119.98878 * 0.28199 * 17 16 15 19 19 Cl 1.73606 * 120.01335 * 179.97438 * 18 17 16 20 20 C 1.38193 * 119.99765 * 89.99978 * 14 13 12 21 21 H 0.96994 * 119.99636 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47181 * 59.99660 * 9 7 2 23 23 H 1.09001 * 109.47555 * 299.99920 * 9 7 2 24 24 H 1.09002 * 109.46969 * 59.99774 * 10 9 7 25 25 H 1.09001 * 109.46838 * 300.00603 * 10 9 7 26 26 H 1.08997 * 109.46713 * 60.00174 * 11 10 9 27 27 H 1.08996 * 109.47239 * 299.99987 * 11 10 9 28 28 H 1.08998 * 109.47482 * 59.99881 * 13 12 11 29 29 H 1.09000 * 109.47133 * 299.99750 * 13 12 11 30 30 H 1.07997 * 119.98420 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.99636 * 179.72646 * 16 15 14 32 32 H 1.07999 * 120.00577 * 180.25936 * 17 16 15 33 33 H 1.08003 * 120.00423 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 6 1.5809 -7.8246 0.0005 14 6 2.4249 -9.0731 0.0005 15 6 2.8167 -9.6426 -1.1970 16 6 3.5859 -10.7909 -1.1978 17 6 3.9737 -11.3642 -0.0012 18 6 3.5868 -10.7918 1.1971 19 17 4.0728 -11.5117 2.7003 20 6 2.8119 -9.6455 1.1974 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 0.8534 -5.0451 -0.8886 27 1 0.8540 -5.0446 0.8913 28 1 0.9514 -7.8112 -0.8892 29 1 0.9521 -7.8116 0.8908 30 1 2.5181 -9.1921 -2.1320 31 1 3.8880 -11.2377 -2.1335 32 1 4.5782 -12.2592 -0.0020 33 1 2.5091 -9.1983 2.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160970433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = -11.853020 kcal Electronic energy + Delta-G solvation = -14735.178019 eV Core-core repulsion = 12104.726060 eV Total energy + Delta-G solvation = -2630.451959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.63377 -36.75337 -34.47321 -33.08581 -32.03908 -31.02515 -27.76950 -27.15804 -23.45035 -22.97670 -21.85513 -20.23797 -17.33836 -16.45543 -15.95093 -15.85038 -15.66171 -14.64089 -14.60649 -14.25431 -14.06500 -13.58463 -13.24027 -13.08808 -12.51028 -12.03754 -11.82090 -11.77955 -11.61775 -11.51761 -11.10694 -10.92442 -10.88588 -10.55114 -9.93682 -9.81226 -9.34293 -9.17572 -9.10054 -8.86551 -8.38186 -7.48948 -6.03273 -4.05802 0.72097 0.92655 1.84400 1.98756 2.80921 3.31244 3.37395 3.41414 3.42858 4.30958 4.44354 4.47673 4.73855 4.86557 4.95973 5.12755 5.31970 5.32764 5.46147 5.47855 5.59028 5.61864 5.90380 6.01420 6.09892 6.18780 6.47476 6.53017 6.69399 6.99711 7.61507 7.73451 7.95681 8.37514 9.00698 9.58579 11.08119 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.040680 B = 0.002696 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.140956 B =10384.305681 C =10650.863686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.095 4.095 11 C -0.075 4.075 12 S -0.265 6.265 13 C -0.054 4.054 14 C -0.052 4.052 15 C -0.098 4.098 16 C -0.107 4.107 17 C -0.111 4.111 18 C -0.034 4.034 19 Cl -0.072 7.072 20 C -0.094 4.094 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 -24.299 -0.181 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.223 4.223 12 S -0.035 6.035 13 C -0.201 4.201 14 C -0.054 4.054 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.131 4.131 18 C -0.061 4.061 19 Cl -0.043 7.043 20 C -0.114 4.114 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.619 -24.179 -0.037 24.823 hybrid contribution -0.898 0.854 0.148 1.248 sum 4.721 -23.325 0.112 23.798 Atomic orbital electron populations 1.69963 1.06081 1.26694 1.50824 1.25022 0.94870 0.99322 0.95232 0.86567 0.79870 0.83288 0.78147 1.20617 1.21196 1.19794 1.21222 0.93141 0.90859 1.50686 0.92532 1.19103 0.93787 0.90839 0.97392 1.21470 0.99172 0.91134 1.01620 1.23668 0.98910 0.95299 1.04429 1.87153 1.17999 1.00281 1.98086 1.22269 0.98831 0.93074 1.05947 1.19235 0.98299 0.94881 0.92948 1.21195 0.97234 0.95431 0.97923 1.21098 0.97895 0.95827 0.97712 1.21072 1.00554 1.00651 0.90822 1.20867 1.01377 0.96538 0.87283 1.98375 1.90611 1.82927 1.32412 1.20955 0.97382 0.94238 0.98842 0.92952 0.96440 0.96416 0.92366 0.92367 0.90473 0.90464 0.88965 0.89093 0.85007 0.84863 0.84974 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.96 5.16 -26.73 -0.14 -2.10 16 11 C -0.08 -1.26 5.94 37.16 0.22 -1.04 16 12 S -0.27 -3.99 21.72 -107.50 -2.33 -6.33 16 13 C -0.05 -0.60 6.07 36.01 0.22 -0.39 16 14 C -0.05 -0.56 5.14 -104.63 -0.54 -1.09 16 15 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 16 C -0.11 -0.88 10.05 -39.59 -0.40 -1.27 16 17 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 18 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 19 Cl -0.07 -0.69 28.96 -51.86 -1.50 -2.19 16 20 C -0.09 -0.99 9.49 -39.55 -0.38 -1.37 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 29 H 0.09 0.94 8.08 -51.92 -0.42 0.52 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -30.05 315.36 -10.56 -40.61 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -4.61 Total: -3.92 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.58 Total: -23.48 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -2.33 Total: -6.33 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.05 -10.56 -40.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160970433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds