Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47019 * 269.99730 * 3 2 1 5 5 H 1.48501 * 109.47362 * 29.99528 * 3 2 1 6 6 H 1.48501 * 109.47546 * 149.99786 * 3 2 1 7 7 C 1.37873 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47526 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47502 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.81397 * 102.99921 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47152 * 180.02562 * 13 12 11 15 15 C 1.38270 * 119.99101 * 270.27576 * 14 13 12 16 16 C 1.38215 * 120.02537 * 180.27948 * 15 14 13 17 17 C 1.38238 * 120.01126 * 359.44038 * 16 15 14 18 18 C 1.38325 * 119.98878 * 0.28199 * 17 16 15 19 19 Cl 1.73606 * 120.01335 * 179.97438 * 18 17 16 20 20 C 1.38193 * 119.99765 * 89.99978 * 14 13 12 21 21 H 0.96994 * 119.99636 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47181 * 59.99660 * 9 7 2 23 23 H 1.09001 * 109.47555 * 299.99920 * 9 7 2 24 24 H 1.09002 * 109.46969 * 59.99774 * 10 9 7 25 25 H 1.09001 * 109.46838 * 300.00603 * 10 9 7 26 26 H 1.08997 * 109.46713 * 60.00174 * 11 10 9 27 27 H 1.08996 * 109.47239 * 299.99987 * 11 10 9 28 28 H 1.08998 * 109.47482 * 59.99881 * 13 12 11 29 29 H 1.09000 * 109.47133 * 299.99750 * 13 12 11 30 30 H 1.07997 * 119.98420 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.99636 * 179.72646 * 16 15 14 32 32 H 1.07999 * 120.00577 * 180.25936 * 17 16 15 33 33 H 1.08003 * 120.00423 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 6 1.5809 -7.8246 0.0005 14 6 2.4249 -9.0731 0.0005 15 6 2.8167 -9.6426 -1.1970 16 6 3.5859 -10.7909 -1.1978 17 6 3.9737 -11.3642 -0.0012 18 6 3.5868 -10.7918 1.1971 19 17 4.0728 -11.5117 2.7003 20 6 2.8119 -9.6455 1.1974 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 0.8534 -5.0451 -0.8886 27 1 0.8540 -5.0446 0.8913 28 1 0.9514 -7.8112 -0.8892 29 1 0.9521 -7.8116 0.8908 30 1 2.5181 -9.1921 -2.1320 31 1 3.8880 -11.2377 -2.1335 32 1 4.5782 -12.2592 -0.0020 33 1 2.5091 -9.1983 2.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160970433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = -25.497395 kcal Electronic energy + Delta-G solvation = -14735.769684 eV Core-core repulsion = 12104.726060 eV Total energy + Delta-G solvation = -2631.043624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34564 -37.48520 -36.36549 -34.05096 -33.84556 -31.72997 -29.47418 -28.18920 -25.35463 -23.68043 -22.75621 -21.92798 -18.59916 -18.02124 -17.01054 -16.73053 -16.55562 -16.44400 -16.16078 -15.33255 -14.81454 -14.49187 -14.39580 -14.23924 -14.09262 -13.56762 -13.41549 -12.80500 -12.74870 -12.58141 -12.46793 -12.38559 -12.28771 -11.84099 -11.65996 -11.46154 -11.22246 -10.89831 -10.56961 -9.88375 -9.64906 -8.67639 -8.22039 -6.33021 -0.09241 0.20753 0.93209 1.13231 1.40267 1.41257 1.52699 1.64995 2.40588 2.70308 3.11439 3.51986 3.78122 4.01665 4.04211 4.10227 4.17270 4.26064 4.42376 4.54782 4.59233 4.72686 4.81603 4.91013 4.97198 5.12837 5.20523 5.33430 5.46084 5.48234 5.67616 5.79463 5.81548 6.21761 6.82728 7.36288 8.89743 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.040680 B = 0.002696 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.140956 B =10384.305681 C =10650.863686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.069 4.069 12 S -0.287 6.287 13 C -0.040 4.040 14 C -0.068 4.068 15 C -0.102 4.102 16 C -0.104 4.104 17 C -0.110 4.110 18 C -0.047 4.047 19 Cl -0.074 7.074 20 C -0.105 4.105 21 H 0.265 0.735 22 H -0.002 1.002 23 H -0.004 1.004 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.145 0.855 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -25.376 -0.867 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.217 4.217 12 S -0.056 6.056 13 C -0.187 4.187 14 C -0.070 4.070 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.074 4.074 19 Cl -0.045 7.045 20 C -0.126 4.126 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.162 0.838 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.599 -25.255 -0.721 26.112 hybrid contribution -1.195 1.046 0.354 1.627 sum 5.404 -24.208 -0.367 24.807 Atomic orbital electron populations 1.70082 1.07711 1.27870 1.51558 1.25955 0.95797 1.03295 0.94623 0.85454 0.78654 0.78430 0.78574 1.19658 1.20585 1.18901 1.21670 0.93542 0.92388 1.50771 0.92373 1.18978 0.94156 0.92331 0.95309 1.21168 0.98017 0.91650 1.01164 1.23374 0.98866 0.94556 1.04921 1.87152 1.18782 1.01508 1.98188 1.22308 0.98212 0.91038 1.07122 1.19242 0.99286 0.94911 0.93572 1.21456 0.97024 0.95814 0.97935 1.21450 0.96813 0.95146 0.98746 1.21397 1.00042 1.01044 0.90451 1.21022 1.01801 0.96726 0.87837 1.98372 1.90606 1.82867 1.32636 1.21031 0.97878 0.94774 0.98912 0.92663 0.98399 0.98514 0.92867 0.92643 0.89875 0.90154 0.87477 0.88318 0.83761 0.81954 0.82996 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.63 4.97 29.85 0.15 1.78 16 10 C -0.08 -3.40 5.16 30.59 0.16 -3.24 16 11 C -0.07 -2.32 5.94 71.98 0.43 -1.89 16 12 S -0.29 -8.37 21.72 -56.49 -1.23 -9.60 16 13 C -0.04 -0.83 6.07 71.24 0.43 -0.40 16 14 C -0.07 -1.35 5.14 -19.87 -0.10 -1.45 16 15 C -0.10 -1.69 9.70 22.27 0.22 -1.47 16 16 C -0.10 -1.39 10.05 22.26 0.22 -1.17 16 17 C -0.11 -1.64 9.83 22.29 0.22 -1.42 16 18 C -0.05 -0.88 6.32 22.32 0.14 -0.74 16 19 Cl -0.07 -1.34 28.96 -2.72 -0.08 -1.41 16 20 C -0.11 -2.13 9.49 22.29 0.21 -1.91 16 21 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 22 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 23 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.11 1.93 8.09 -2.39 -0.02 1.91 16 29 H 0.10 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -64.43 315.36 4.85 -59.57 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.08 Total: 3.75 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 2.77 Total: -42.49 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.26 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.23 Total: -9.60 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.41 kcal Total: -64.43 4.85 -59.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160970433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.076 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds