Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99700 * 2 1 4 4 H 1.48496 * 109.47440 * 270.00672 * 3 2 1 5 5 H 1.48505 * 109.46745 * 30.00588 * 3 2 1 6 6 H 1.48501 * 109.47057 * 150.00292 * 3 2 1 7 7 C 1.37876 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47324 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47511 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00049 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46945 * 179.97438 * 13 12 11 15 15 C 1.38237 * 120.00455 * 89.99930 * 14 13 12 16 16 C 1.38224 * 120.01313 * 179.74163 * 15 14 13 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.01174 * 270.27665 * 14 13 12 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 13 21 21 H 0.96997 * 120.00225 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47169 * 60.00166 * 9 7 2 23 23 H 1.08997 * 109.46921 * 299.99782 * 9 7 2 24 24 H 1.08999 * 109.47359 * 59.99422 * 10 9 7 25 25 H 1.09011 * 109.46916 * 299.99653 * 10 9 7 26 26 H 1.08999 * 109.47407 * 59.99411 * 11 10 9 27 27 H 1.09003 * 109.47092 * 299.99697 * 11 10 9 28 28 H 1.09006 * 109.47029 * 60.00391 * 13 12 11 29 29 H 1.08995 * 109.46982 * 299.99972 * 13 12 11 30 30 H 1.08002 * 119.99593 * 0.02780 * 15 14 13 31 31 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 32 32 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0467 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 16 2.6595 -6.3658 -0.0019 13 6 1.5812 -7.8246 -0.0019 14 6 2.4253 -9.0730 -0.0031 15 6 2.8133 -9.6463 1.1934 16 6 3.5830 -10.7944 1.1925 17 6 3.9698 -11.3670 -0.0050 18 6 3.5875 -10.7915 -1.2018 19 6 2.8167 -9.6424 -1.2015 20 17 2.3363 -8.9186 -2.7045 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 2.8722 -3.6042 0.8894 25 1 2.8721 -3.6042 -0.8906 26 1 0.8542 -5.0446 -0.8913 27 1 0.8537 -5.0451 0.8886 28 1 0.9517 -7.8111 -0.8917 29 1 0.9524 -7.8115 0.8883 30 1 2.5112 -9.1996 2.1292 31 1 3.8828 -11.2440 2.1275 32 1 4.5716 -12.2639 -0.0051 33 1 3.8893 -11.2392 -2.1372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160973445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = -9.578733 kcal Electronic energy + Delta-G solvation = -14965.192262 eV Core-core repulsion = 12334.838923 eV Total energy + Delta-G solvation = -2630.353339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61907 -36.56798 -34.43991 -33.14107 -32.01186 -30.98587 -27.70940 -27.08765 -23.41614 -22.97142 -21.82452 -20.20229 -17.35095 -16.44588 -16.00847 -15.81833 -15.54007 -14.60151 -14.57807 -14.24973 -14.06434 -13.53045 -13.05283 -12.99185 -12.48273 -12.02609 -11.78033 -11.69679 -11.57717 -11.53746 -10.94403 -10.86775 -10.84865 -10.53890 -9.89861 -9.77981 -9.30579 -9.15089 -9.07406 -8.80978 -8.36177 -7.40091 -6.01191 -4.03627 0.73823 0.95212 1.98281 2.05151 2.87329 3.32638 3.38606 3.42653 3.44300 4.34343 4.46031 4.46157 4.67095 4.90465 5.04110 5.21104 5.27784 5.34786 5.50646 5.52672 5.63726 5.66761 5.92449 6.07171 6.13376 6.14702 6.50080 6.56868 6.73156 7.03048 7.64178 7.76489 7.97890 8.39873 9.02871 9.60579 11.10188 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.038831 B = 0.003146 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.895952 B = 8899.150562 C = 9191.204351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.094 4.094 11 C -0.075 4.075 12 S -0.260 6.260 13 C -0.059 4.059 14 C -0.057 4.057 15 C -0.091 4.091 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.022 4.022 20 Cl -0.058 7.058 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -24.367 0.011 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.223 4.223 12 S -0.029 6.029 13 C -0.206 4.206 14 C -0.059 4.059 15 C -0.111 4.111 16 C -0.134 4.134 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.051 4.051 20 Cl -0.029 7.029 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.597 -24.113 -0.126 24.754 hybrid contribution -0.988 0.965 -0.159 1.390 sum 4.609 -23.148 -0.285 23.604 Atomic orbital electron populations 1.69960 1.06076 1.26665 1.50863 1.25022 0.94862 0.99298 0.95260 0.86573 0.79866 0.83321 0.78143 1.20625 1.21211 1.19800 1.21228 0.93137 0.90866 1.50625 0.92538 1.19101 0.93796 0.90840 0.97383 1.21463 0.99156 0.91140 1.01586 1.23655 0.98959 0.95310 1.04370 1.87069 1.17776 1.00013 1.98079 1.22314 0.99040 0.93105 1.06155 1.19184 0.99101 0.95496 0.92092 1.21063 0.97369 0.95500 0.97196 1.21234 0.97902 0.95831 0.98476 1.21131 0.99753 1.00096 0.91792 1.21045 0.98034 0.94643 0.99396 1.20856 1.00902 0.96123 0.87170 1.98388 1.90399 1.82910 1.31206 0.92970 0.96431 0.96436 0.92393 0.92379 0.90520 0.90536 0.88763 0.89015 0.84791 0.85243 0.85120 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 10 C -0.09 -2.00 5.16 -26.73 -0.14 -2.14 16 11 C -0.07 -1.32 5.94 37.16 0.22 -1.09 16 12 S -0.26 -4.11 21.72 -107.50 -2.33 -6.45 16 13 C -0.06 -0.74 5.67 36.00 0.20 -0.53 16 14 C -0.06 -0.66 5.14 -104.59 -0.54 -1.19 16 15 C -0.09 -0.90 9.70 -39.59 -0.38 -1.28 16 16 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 17 C -0.11 -0.85 10.05 -39.59 -0.40 -1.25 16 18 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 19 C -0.02 -0.25 6.31 -39.50 -0.25 -0.50 16 20 Cl -0.06 -0.69 27.30 -51.86 -1.42 -2.11 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 26 H 0.08 1.32 8.14 -51.92 -0.42 0.89 16 27 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.09 1.18 6.91 -51.92 -0.36 0.82 16 29 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -30.70 312.69 -10.49 -41.19 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.55 Total: -4.01 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.62 Total: -23.84 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.33 Total: -6.45 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.42 Total: -2.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.70 -10.49 -41.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160973445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.609 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds