Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99700 * 2 1 4 4 H 1.48496 * 109.47440 * 270.00672 * 3 2 1 5 5 H 1.48505 * 109.46745 * 30.00588 * 3 2 1 6 6 H 1.48501 * 109.47057 * 150.00292 * 3 2 1 7 7 C 1.37876 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47324 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47511 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00049 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46945 * 179.97438 * 13 12 11 15 15 C 1.38237 * 120.00455 * 89.99930 * 14 13 12 16 16 C 1.38224 * 120.01313 * 179.74163 * 15 14 13 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.01174 * 270.27665 * 14 13 12 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 13 21 21 H 0.96997 * 120.00225 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47169 * 60.00166 * 9 7 2 23 23 H 1.08997 * 109.46921 * 299.99782 * 9 7 2 24 24 H 1.08999 * 109.47359 * 59.99422 * 10 9 7 25 25 H 1.09011 * 109.46916 * 299.99653 * 10 9 7 26 26 H 1.08999 * 109.47407 * 59.99411 * 11 10 9 27 27 H 1.09003 * 109.47092 * 299.99697 * 11 10 9 28 28 H 1.09006 * 109.47029 * 60.00391 * 13 12 11 29 29 H 1.08995 * 109.46982 * 299.99972 * 13 12 11 30 30 H 1.08002 * 119.99593 * 0.02780 * 15 14 13 31 31 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 32 32 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0467 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 16 2.6595 -6.3658 -0.0019 13 6 1.5812 -7.8246 -0.0019 14 6 2.4253 -9.0730 -0.0031 15 6 2.8133 -9.6463 1.1934 16 6 3.5830 -10.7944 1.1925 17 6 3.9698 -11.3670 -0.0050 18 6 3.5875 -10.7915 -1.2018 19 6 2.8167 -9.6424 -1.2015 20 17 2.3363 -8.9186 -2.7045 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 2.8722 -3.6042 0.8894 25 1 2.8721 -3.6042 -0.8906 26 1 0.8542 -5.0446 -0.8913 27 1 0.8537 -5.0451 0.8886 28 1 0.9517 -7.8111 -0.8917 29 1 0.9524 -7.8115 0.8883 30 1 2.5112 -9.1996 2.1292 31 1 3.8828 -11.2440 2.1275 32 1 4.5716 -12.2639 -0.0051 33 1 3.8893 -11.2392 -2.1372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160973445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = -24.055338 kcal Electronic energy + Delta-G solvation = -14965.820014 eV Core-core repulsion = 12334.838923 eV Total energy + Delta-G solvation = -2630.981091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33757 -37.40372 -36.37583 -34.05986 -33.93074 -31.68143 -29.48168 -28.13497 -25.35768 -23.67869 -22.73063 -21.93342 -18.60081 -18.03795 -17.06016 -16.82232 -16.56236 -16.31543 -16.16780 -15.38736 -14.80106 -14.49229 -14.37996 -14.13447 -14.09399 -13.50087 -13.42566 -12.79470 -12.75395 -12.63964 -12.48363 -12.35108 -12.26933 -11.72893 -11.66965 -11.49582 -11.23982 -10.90417 -10.57538 -9.85668 -9.62199 -8.66049 -8.22233 -6.33444 -0.09762 0.24830 0.94606 1.17653 1.39770 1.41036 1.52464 1.63982 2.40298 2.72694 3.11085 3.52291 3.69343 4.01967 4.03053 4.09032 4.21497 4.37730 4.43865 4.50976 4.57511 4.72575 4.80177 4.94959 4.95902 5.11731 5.25473 5.37501 5.46210 5.47376 5.66551 5.80729 5.85373 6.21089 6.82073 7.35807 8.89598 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.038831 B = 0.003146 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.895952 B = 8899.150562 C = 9191.204351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.080 4.080 11 C -0.070 4.070 12 S -0.276 6.276 13 C -0.045 4.045 14 C -0.080 4.080 15 C -0.099 4.099 16 C -0.114 4.114 17 C -0.101 4.101 18 C -0.120 4.120 19 C -0.039 4.039 20 Cl -0.075 7.075 21 H 0.265 0.735 22 H -0.005 1.005 23 H -0.002 1.002 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 -25.851 0.721 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.119 4.119 11 C -0.218 4.218 12 S -0.046 6.046 13 C -0.193 4.193 14 C -0.082 4.082 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.138 4.138 19 C -0.068 4.068 20 Cl -0.046 7.046 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.016 0.984 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.017 -25.597 0.583 26.548 hybrid contribution -1.411 1.255 -0.353 1.921 sum 5.606 -24.342 0.230 24.980 Atomic orbital electron populations 1.70083 1.07740 1.27883 1.51526 1.25967 0.95802 1.03327 0.94591 0.85442 0.78690 0.78366 0.78541 1.19764 1.20504 1.18787 1.21665 0.93548 0.92335 1.50826 0.92328 1.18973 0.94141 0.92361 0.95259 1.21161 0.98009 0.91525 1.01185 1.23371 0.98963 0.94739 1.04707 1.87032 1.18371 1.01015 1.98144 1.22321 0.98542 0.91690 1.06711 1.19208 1.00458 0.95532 0.93029 1.21308 0.97481 0.96167 0.96900 1.21623 0.96655 0.94952 0.99944 1.21562 0.98805 1.00580 0.90981 1.21339 0.97539 0.94043 1.00900 1.21075 1.02034 0.97162 0.86500 1.98378 1.90665 1.83322 1.32212 0.92656 0.98651 0.98378 0.92515 0.92895 0.90562 0.89896 0.89079 0.87611 0.83807 0.82342 0.81904 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.08 -3.46 5.16 30.59 0.16 -3.30 16 11 C -0.07 -2.47 5.94 71.98 0.43 -2.05 16 12 S -0.28 -8.65 21.72 -56.49 -1.23 -9.87 16 13 C -0.05 -1.11 5.67 71.24 0.40 -0.70 16 14 C -0.08 -1.76 5.14 -19.84 -0.10 -1.86 16 15 C -0.10 -1.72 9.70 22.27 0.22 -1.50 16 16 C -0.11 -1.47 10.05 22.27 0.22 -1.24 16 17 C -0.10 -1.23 10.05 22.26 0.22 -1.01 16 18 C -0.12 -1.96 9.83 22.29 0.22 -1.74 16 19 C -0.04 -0.85 6.31 22.32 0.14 -0.71 16 20 Cl -0.07 -1.77 27.30 -2.72 -0.07 -1.85 16 21 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 22 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 25 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.09 2.26 6.91 -2.39 -0.02 2.24 16 29 H 0.11 2.23 8.09 -2.39 -0.02 2.21 16 30 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -66.48 312.69 4.85 -61.64 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.08 Total: 3.33 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 2.75 Total: -43.26 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.28 Total: -56.84 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.23 Total: -9.87 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.85 kcal Total: -66.48 4.85 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160973445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds