Wall clock time and date at job start Mon Mar 30 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46731 * 269.99927 * 3 2 1 5 5 H 1.48498 * 109.47250 * 29.99507 * 3 2 1 6 6 H 1.48498 * 109.47084 * 150.00232 * 3 2 1 7 7 C 1.37875 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 188.51537 * 7 2 1 9 9 C 1.50697 * 119.99999 * 8.52190 * 7 2 1 10 10 C 1.52998 * 115.55051 * 274.53152 * 9 7 2 11 11 O 1.42896 * 109.47156 * 278.64171 * 10 9 7 12 12 C 1.35953 * 117.00390 * 184.07378 * 11 10 9 13 13 C 1.38684 * 120.05348 * 354.80516 * 12 11 10 14 14 C 1.38188 * 119.99311 * 180.02562 * 13 12 11 15 15 C 1.38253 * 120.10273 * 0.02601 * 14 13 12 16 16 C 1.38361 * 120.11238 * 359.95253 * 15 14 13 17 17 Cl 1.73605 * 119.99402 * 180.02562 * 16 15 14 18 18 C 1.38438 * 120.00843 * 0.27907 * 16 15 14 19 19 F 1.35101 * 120.05213 * 179.74688 * 18 16 15 20 20 C 1.52994 * 117.52002 * 60.22992 * 9 7 2 21 21 C 1.52994 * 60.00349 * 107.48119 * 20 9 7 22 22 H 0.96999 * 120.00198 * 5.01618 * 1 2 3 23 23 H 1.09001 * 109.47679 * 158.64015 * 10 9 7 24 24 H 1.09001 * 109.47427 * 38.63548 * 10 9 7 25 25 H 1.07996 * 120.00724 * 0.02562 * 13 12 11 26 26 H 1.07990 * 119.94521 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.94088 * 179.97438 * 15 14 13 28 28 H 1.09001 * 117.50246 * 214.97219 * 20 9 7 29 29 H 1.09010 * 117.50060 * 359.97438 * 20 9 7 30 30 H 1.09001 * 117.50220 * 252.51347 * 21 20 9 31 31 H 1.09000 * 117.51583 * 107.47660 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0757 -1.1991 0.1390 9 6 1.2636 -2.4920 -0.1923 10 6 0.6687 -3.1069 1.0761 11 8 1.6862 -3.8192 1.7826 12 6 1.3036 -4.5004 2.8952 13 6 0.0008 -4.3969 3.3594 14 6 -0.3865 -5.0895 4.4907 15 6 0.5230 -5.8857 5.1616 16 6 1.8237 -5.9925 4.7021 17 17 2.9630 -6.9937 5.5467 18 6 2.2180 -5.2969 3.5720 19 9 3.4892 -5.3965 3.1255 20 6 0.4870 -2.6755 -1.4976 21 6 1.7852 -3.4507 -1.2646 22 1 -0.4850 0.8368 -0.0734 23 1 -0.1339 -3.7930 0.8054 24 1 0.2712 -2.3156 1.7116 25 1 -0.7109 -3.7751 2.8368 26 1 -1.4013 -5.0086 4.8512 27 1 0.2175 -6.4255 6.0458 28 1 -0.4479 -3.2342 -1.4528 29 1 0.5114 -1.8570 -2.2172 30 1 2.6641 -3.1424 -1.8308 31 1 1.7049 -4.5194 -1.0662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167126574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:59 Heat of formation + Delta-G solvation = -55.444716 kcal Electronic energy + Delta-G solvation = -18031.392560 eV Core-core repulsion = 14832.837147 eV Total energy + Delta-G solvation = -3198.555413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.90987 -41.05674 -39.09141 -37.88376 -37.19093 -34.05513 -31.59056 -31.07130 -28.51951 -27.31305 -23.85886 -23.64601 -22.93356 -21.11047 -19.47054 -18.50268 -18.07420 -17.59325 -17.24869 -16.67734 -16.36152 -16.11191 -15.76092 -15.58664 -14.95052 -14.39301 -14.13449 -13.98116 -13.57683 -13.13560 -12.91299 -12.88373 -12.72629 -12.42887 -12.37925 -12.10083 -12.08289 -11.85874 -11.51495 -10.76429 -10.50830 -10.14920 -9.84641 -9.27531 -8.18587 -6.28445 -0.14476 0.13550 0.82906 1.39227 1.41688 1.50694 2.18808 2.40546 2.41207 3.05853 3.11327 3.50744 3.74544 3.80880 4.06270 4.18872 4.22034 4.38550 4.44317 4.63872 4.68809 4.82891 4.92415 4.95172 5.07971 5.16615 5.23440 5.50278 5.51675 5.58165 5.71697 6.32324 6.41300 6.75399 7.40331 8.90325 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.004788 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.122437 B = 5846.655012 C = 5899.796527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.034 3.966 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.043 0.957 9 C 0.003 3.997 10 C 0.120 3.880 11 O -0.320 6.320 12 C 0.094 3.906 13 C -0.187 4.187 14 C -0.058 4.058 15 C -0.119 4.119 16 C -0.041 4.041 17 Cl -0.043 7.043 18 C 0.035 3.965 19 F -0.141 7.141 20 C -0.138 4.138 21 C -0.185 4.185 22 H 0.264 0.736 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.147 0.853 26 H 0.183 0.817 27 H 0.179 0.821 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -11.644 9.995 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.003 3.997 10 C 0.045 3.955 11 O -0.233 6.233 12 C 0.046 3.954 13 C -0.206 4.206 14 C -0.076 4.076 15 C -0.137 4.137 16 C -0.068 4.068 17 Cl -0.014 7.014 18 C 0.015 3.985 19 F -0.119 7.119 20 C -0.175 4.175 21 C -0.223 4.223 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.165 0.835 26 H 0.200 0.800 27 H 0.196 0.804 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.124 -11.579 10.012 15.623 hybrid contribution 0.857 1.111 -0.378 1.453 sum -2.268 -10.468 9.634 14.406 Atomic orbital electron populations 1.70057 1.06631 1.27845 1.49150 1.25552 0.95632 1.01499 0.94024 0.85764 0.78777 0.80005 0.78422 1.19804 1.20470 1.20180 1.20634 0.92927 0.90615 1.50938 0.93923 1.18908 1.00427 0.94301 0.86106 1.22491 0.87670 0.92316 0.92976 1.86199 1.39462 1.61649 1.36039 1.19393 0.93857 0.93166 0.88974 1.21619 0.94001 1.04318 1.00648 1.21428 1.01484 0.92626 0.92049 1.21271 0.89092 1.01074 1.02296 1.20872 0.93787 0.98223 0.93963 1.98372 1.60394 1.66844 1.75819 1.16981 0.79865 1.04091 0.97585 1.91461 1.36259 1.95147 1.89082 1.22506 0.93932 1.00876 1.00210 1.22907 0.97622 0.96489 1.05248 0.92663 0.92479 0.92984 0.83529 0.79987 0.80389 0.89541 0.91240 0.90417 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.99 12.98 21.45 0.28 -48.71 16 2 C 0.03 1.84 5.37 84.65 0.45 2.30 16 3 Si 0.94 43.05 29.55 68.60 2.03 45.08 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.51 -28.48 8.82 25.60 0.23 -28.26 16 8 H 0.04 2.46 7.83 -2.91 -0.02 2.44 16 9 C 0.00 0.15 1.58 -52.93 -0.08 0.07 16 10 C 0.12 5.30 4.64 71.98 0.33 5.63 16 11 O -0.32 -14.21 9.97 -93.02 -0.93 -15.13 16 12 C 0.09 3.41 6.68 22.53 0.15 3.56 16 13 C -0.19 -5.31 9.03 22.36 0.20 -5.11 16 14 C -0.06 -1.14 10.04 22.26 0.22 -0.92 16 15 C -0.12 -2.33 9.83 22.30 0.22 -2.11 16 16 C -0.04 -1.09 6.32 22.35 0.14 -0.95 16 17 Cl -0.04 -1.04 28.61 -2.72 -0.08 -1.12 16 18 C 0.04 1.22 7.28 22.47 0.16 1.39 16 19 F -0.14 -5.47 16.68 44.97 0.75 -4.72 16 20 C -0.14 -6.16 9.43 30.59 0.29 -5.87 16 21 C -0.19 -8.08 9.92 30.59 0.30 -7.78 16 22 H 0.26 13.67 8.32 -92.71 -0.77 12.90 16 23 H 0.06 2.22 7.45 -2.39 -0.02 2.20 16 24 H 0.05 2.47 7.65 -2.39 -0.02 2.45 16 25 H 0.15 4.10 6.32 -2.91 -0.02 4.08 16 26 H 0.18 2.02 8.06 -2.92 -0.02 2.00 16 27 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.09 3.44 8.07 -2.39 -0.02 3.42 16 29 H 0.07 3.31 8.14 -2.38 -0.02 3.29 16 30 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -61.80 294.25 5.82 -55.98 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.15 Total: 6.67 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 2.62 Total: -38.05 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.28 Total: -48.71 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.93 Total: -15.13 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.75 Total: -4.72 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -61.80 5.82 -55.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167126574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.539 kcal (2) G-P(sol) polarization free energy of solvation -61.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds