Wall clock time and date at job start Mon Mar 30 2020 01:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35764 * 116.99880 * 2 1 4 4 C 1.37985 * 123.47831 * 0.18809 * 3 2 1 5 5 C 1.33637 * 115.09439 * 180.25536 * 4 3 2 6 6 C 1.50707 * 124.41577 * 179.76197 * 5 4 3 7 7 S 1.70570 * 111.16417 * 359.76179 * 5 4 3 8 8 C 1.37392 * 123.48163 * 179.97438 * 3 2 1 9 9 C 1.41468 * 125.48191 * 0.04022 * 8 3 2 10 10 O 1.21707 * 119.99750 * 359.71497 * 9 8 3 11 11 O 1.34971 * 120.00312 * 179.71712 * 9 8 3 12 12 C 1.42895 * 117.00107 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47036 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46866 * 90.00390 * 18 16 14 20 20 H 1.48502 * 109.47245 * 210.00175 * 18 16 14 21 21 H 1.48494 * 109.47271 * 330.00312 * 18 16 14 22 22 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47637 * 299.99790 * 1 2 3 24 24 H 1.08995 * 109.47177 * 60.00407 * 1 2 3 25 25 H 1.08006 * 122.44983 * 0.02562 * 4 3 2 26 26 H 1.09001 * 109.47017 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.47083 * 300.02415 * 6 5 4 28 28 H 1.09000 * 109.47132 * 60.02279 * 6 5 4 29 29 H 1.09001 * 109.46798 * 60.00111 * 12 11 9 30 30 H 1.08993 * 109.47318 * 299.99577 * 12 11 9 31 31 H 1.09001 * 109.46801 * 300.00369 * 13 12 11 32 32 H 1.09001 * 109.46998 * 59.99965 * 13 12 11 33 33 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3654 2.4104 0.0038 5 6 2.1391 3.4999 -0.0023 6 6 1.6187 4.9143 -0.0049 7 16 3.7926 3.0810 -0.0066 8 6 3.4104 1.3648 0.0005 9 6 4.3564 0.3129 0.0003 10 8 3.9795 -0.8443 0.0048 11 8 5.6768 0.5926 -0.0049 12 6 6.5753 -0.5185 -0.0042 13 6 8.0177 -0.0079 -0.0112 14 6 8.9653 -1.1796 -0.0099 15 1 8.5776 -2.1877 -0.0050 16 6 10.3272 -0.9648 -0.0160 17 7 10.7993 0.2627 -0.0225 18 14 11.5019 -2.4173 -0.0150 19 1 11.8078 -2.8074 -1.4150 20 1 12.7586 -2.0371 0.6787 21 1 10.8731 -3.5619 0.6917 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 0.2867 2.4655 0.0074 26 1 2.4577 5.6101 -0.0104 27 1 1.0076 5.0749 -0.8930 28 1 1.0144 5.0807 0.8869 29 1 6.4013 -1.1269 -0.8917 30 1 6.4073 -1.1211 0.8882 31 1 8.1855 0.5946 -0.9040 32 1 8.1919 0.6008 0.8760 33 1 11.7574 0.4138 -0.0264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172202280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:20 Heat of formation + Delta-G solvation = -101.540809 kcal Electronic energy + Delta-G solvation = -17773.096475 eV Core-core repulsion = 14698.046197 eV Total energy + Delta-G solvation = -3075.050278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39292 -39.35066 -36.57128 -35.90057 -33.26594 -32.15143 -30.21626 -28.30184 -27.30227 -24.88055 -23.40907 -22.07856 -20.70431 -19.30752 -18.51081 -16.97396 -16.69945 -16.23776 -15.98153 -15.61255 -15.30288 -14.54466 -14.34100 -14.18904 -13.98725 -13.25076 -12.94813 -12.80919 -12.37486 -12.35525 -12.21932 -11.69352 -11.16243 -11.04885 -11.02739 -10.90368 -10.67162 -10.60639 -10.11007 -9.52343 -9.48527 -9.23153 -8.85064 -8.38100 -8.15334 -6.04576 -4.08167 0.34626 1.35300 1.73036 2.15448 3.29455 3.32661 3.33112 3.37517 3.40598 3.50061 4.31394 4.45323 4.81613 4.90487 4.91910 4.94101 5.14324 5.21876 5.28713 5.31966 5.54496 5.61645 5.69964 6.02119 6.22154 6.24350 6.75477 7.05807 7.15982 7.64248 7.70805 7.94206 8.29215 8.42726 8.97409 9.55741 11.07093 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030978 B = 0.003898 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.645283 B = 7182.283786 C = 8054.870158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.273 6.273 3 C 0.195 3.805 4 C -0.228 4.228 5 C -0.175 4.175 6 C -0.087 4.087 7 S 0.288 5.712 8 C -0.316 4.316 9 C 0.532 3.468 10 O -0.502 6.502 11 O -0.354 6.354 12 C 0.075 3.925 13 C 0.026 3.974 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.103 0.897 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.148 0.852 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.187 9.630 0.031 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.184 6.184 3 C 0.135 3.865 4 C -0.261 4.261 5 C -0.296 4.296 6 C -0.145 4.145 7 S 0.556 5.444 8 C -0.434 4.434 9 C 0.378 3.622 10 O -0.393 6.393 11 O -0.271 6.271 12 C 0.002 3.998 13 C -0.011 4.011 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.121 0.879 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.166 0.834 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.638 9.990 0.028 22.929 hybrid contribution -0.964 -1.648 -0.004 1.909 sum -21.602 8.343 0.024 23.157 Atomic orbital electron populations 1.23173 0.78362 1.04376 1.01259 1.86333 1.20916 1.24242 1.86954 1.18193 0.89824 0.85475 0.93047 1.19808 1.01776 0.90456 1.14026 1.24243 1.00684 1.00550 1.04089 1.20446 1.01773 0.88859 1.03470 1.83539 0.99951 0.94425 1.66518 1.21823 0.93736 0.98412 1.29417 1.18130 0.82427 0.87306 0.74352 1.90888 1.80903 1.21116 1.46373 1.86188 1.15652 1.41605 1.83663 1.23196 0.89619 0.86160 1.00812 1.19167 0.85681 0.97501 0.98796 1.21009 0.90856 0.92539 1.51831 0.92257 1.24978 0.98278 0.95959 0.94959 1.69978 1.13401 1.19547 1.50047 0.86480 0.80197 0.82467 0.78213 1.20515 1.21092 1.19725 0.87877 0.92563 0.92572 0.83410 0.90741 0.90017 0.90011 0.92628 0.92616 0.95382 0.95374 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.94 101.05 1.00 1.21 16 2 O -0.27 -4.05 9.36 -36.55 -0.34 -4.39 16 3 C 0.20 2.83 6.70 -39.98 -0.27 2.57 16 4 C -0.23 -2.41 9.02 -41.29 -0.37 -2.79 16 5 C -0.18 -1.73 6.27 -35.92 -0.23 -1.95 16 6 C -0.09 -0.53 10.32 36.01 0.37 -0.16 16 7 S 0.29 3.69 22.74 -107.50 -2.44 1.24 16 8 C -0.32 -5.32 6.28 -38.66 -0.24 -5.57 16 9 C 0.53 11.12 7.72 31.96 0.25 11.36 16 10 O -0.50 -11.64 15.62 -25.55 -0.40 -12.03 16 11 O -0.35 -7.86 9.87 -41.24 -0.41 -8.27 16 12 C 0.08 1.81 5.32 37.16 0.20 2.01 16 13 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 14 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 15 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 22 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 24 H 0.06 0.38 7.89 -51.93 -0.41 -0.02 16 25 H 0.15 1.11 6.99 -52.48 -0.37 0.75 16 26 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -34.55 307.08 -7.20 -41.76 By element: Atomic # 1 Polarization: -2.88 SS G_CDS: -4.11 Total: -6.98 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 0.15 Total: -6.66 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -1.15 Total: -24.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.44 Total: 1.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.55 -7.20 -41.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172202280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.785 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds