Wall clock time and date at job start Mon Mar 30 2020 01:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35764 * 116.99880 * 2 1 4 4 C 1.37985 * 123.47831 * 0.18809 * 3 2 1 5 5 C 1.33637 * 115.09439 * 180.25536 * 4 3 2 6 6 C 1.50707 * 124.41577 * 179.76197 * 5 4 3 7 7 S 1.70570 * 111.16417 * 359.76179 * 5 4 3 8 8 C 1.37392 * 123.48163 * 179.97438 * 3 2 1 9 9 C 1.41468 * 125.48191 * 0.04022 * 8 3 2 10 10 O 1.21707 * 119.99750 * 359.71497 * 9 8 3 11 11 O 1.34971 * 120.00312 * 179.71712 * 9 8 3 12 12 C 1.42895 * 117.00107 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47036 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46866 * 90.00390 * 18 16 14 20 20 H 1.48502 * 109.47245 * 210.00175 * 18 16 14 21 21 H 1.48494 * 109.47271 * 330.00312 * 18 16 14 22 22 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47637 * 299.99790 * 1 2 3 24 24 H 1.08995 * 109.47177 * 60.00407 * 1 2 3 25 25 H 1.08006 * 122.44983 * 0.02562 * 4 3 2 26 26 H 1.09001 * 109.47017 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.47083 * 300.02415 * 6 5 4 28 28 H 1.09000 * 109.47132 * 60.02279 * 6 5 4 29 29 H 1.09001 * 109.46798 * 60.00111 * 12 11 9 30 30 H 1.08993 * 109.47318 * 299.99577 * 12 11 9 31 31 H 1.09001 * 109.46801 * 300.00369 * 13 12 11 32 32 H 1.09001 * 109.46998 * 59.99965 * 13 12 11 33 33 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3654 2.4104 0.0038 5 6 2.1391 3.4999 -0.0023 6 6 1.6187 4.9143 -0.0049 7 16 3.7926 3.0810 -0.0066 8 6 3.4104 1.3648 0.0005 9 6 4.3564 0.3129 0.0003 10 8 3.9795 -0.8443 0.0048 11 8 5.6768 0.5926 -0.0049 12 6 6.5753 -0.5185 -0.0042 13 6 8.0177 -0.0079 -0.0112 14 6 8.9653 -1.1796 -0.0099 15 1 8.5776 -2.1877 -0.0050 16 6 10.3272 -0.9648 -0.0160 17 7 10.7993 0.2627 -0.0225 18 14 11.5019 -2.4173 -0.0150 19 1 11.8078 -2.8074 -1.4150 20 1 12.7586 -2.0371 0.6787 21 1 10.8731 -3.5619 0.6917 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 0.2867 2.4655 0.0074 26 1 2.4577 5.6101 -0.0104 27 1 1.0076 5.0749 -0.8930 28 1 1.0144 5.0807 0.8869 29 1 6.4013 -1.1269 -0.8917 30 1 6.4073 -1.1211 0.8882 31 1 8.1855 0.5946 -0.9040 32 1 8.1919 0.6008 0.8760 33 1 11.7574 0.4138 -0.0264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172202280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:19 Heat of formation + Delta-G solvation = -123.143667 kcal Electronic energy + Delta-G solvation = -17774.033245 eV Core-core repulsion = 14698.046197 eV Total energy + Delta-G solvation = -3075.987048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72100 -40.71706 -37.75770 -37.37620 -35.44854 -33.16788 -32.21843 -29.19046 -28.31484 -26.82692 -24.34034 -23.57649 -22.63164 -20.42046 -19.80889 -18.57733 -18.16857 -17.72981 -17.60611 -16.81799 -16.70605 -16.40239 -15.36004 -15.16773 -14.82487 -14.67227 -14.44040 -14.34530 -13.59091 -13.31239 -13.21323 -13.03371 -13.01526 -12.60219 -12.56277 -12.48363 -11.92073 -11.84830 -11.78328 -11.53906 -11.45484 -11.37895 -10.61812 -9.85480 -9.16858 -8.27397 -6.40909 -0.70963 0.34569 0.79209 1.12061 1.40258 1.42832 1.54071 1.86653 1.89345 2.39342 2.41057 3.06481 3.52836 3.99340 4.07430 4.18925 4.19707 4.26251 4.34027 4.37087 4.57130 4.67823 4.70718 4.77686 4.88551 5.01798 5.21694 5.25599 5.44213 5.51853 5.72964 6.06129 6.18040 6.70139 6.76064 7.28561 8.85509 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030978 B = 0.003898 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.645283 B = 7182.283786 C = 8054.870158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.309 6.309 3 C 0.212 3.788 4 C -0.234 4.234 5 C -0.133 4.133 6 C -0.091 4.091 7 S 0.271 5.729 8 C -0.383 4.383 9 C 0.530 3.470 10 O -0.541 6.541 11 O -0.361 6.361 12 C 0.092 3.908 13 C 0.035 3.965 14 C -0.553 4.553 15 H 0.063 0.937 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.976 3.024 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.265 1.265 22 H 0.114 0.886 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.189 0.811 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.276 10.641 0.023 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.221 6.221 3 C 0.150 3.850 4 C -0.265 4.265 5 C -0.254 4.254 6 C -0.149 4.149 7 S 0.538 5.462 8 C -0.499 4.499 9 C 0.380 3.620 10 O -0.435 6.435 11 O -0.279 6.279 12 C 0.018 3.982 13 C -0.003 4.003 14 C -0.590 4.590 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.189 1.189 22 H 0.132 0.868 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.206 0.794 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.760 11.007 0.019 25.282 hybrid contribution -0.534 -1.825 -0.003 1.901 sum -23.294 9.182 0.016 25.038 Atomic orbital electron populations 1.23573 0.75202 1.05991 1.03436 1.86288 1.24351 1.25196 1.86268 1.18621 0.89296 0.86766 0.90307 1.20080 1.03586 0.88665 1.14187 1.24803 0.98476 1.02549 0.99598 1.20720 1.02672 0.85847 1.05634 1.83520 1.02897 0.92092 1.67725 1.21772 0.94044 0.99335 1.34793 1.18737 0.81866 0.88209 0.73228 1.90839 1.80975 1.22745 1.48909 1.86174 1.16786 1.40625 1.84274 1.22737 0.88589 0.86414 1.00490 1.18974 0.87781 0.96804 0.96707 1.21364 0.91891 0.93014 1.52754 0.91907 1.25974 1.00060 0.99221 0.93928 1.70097 1.14228 1.21898 1.50254 0.85293 0.77575 0.78493 0.78744 1.19428 1.20081 1.18880 0.86815 0.90289 0.90301 0.79403 0.89912 0.87584 0.87580 0.92889 0.92898 0.97427 0.97421 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.94 113.37 1.13 1.30 16 2 O -0.31 -9.01 9.36 -74.13 -0.69 -9.70 16 3 C 0.21 6.00 6.70 22.01 0.15 6.15 16 4 C -0.23 -4.20 9.02 21.17 0.19 -4.00 16 5 C -0.13 -2.21 6.27 24.64 0.15 -2.06 16 6 C -0.09 -0.66 10.32 71.24 0.74 0.08 16 7 S 0.27 6.88 22.74 -56.49 -1.28 5.59 16 8 C -0.38 -13.26 6.28 22.87 0.14 -13.12 16 9 C 0.53 23.44 7.72 68.62 0.53 23.97 16 10 O -0.54 -26.52 15.62 25.01 0.39 -26.13 16 11 O -0.36 -17.08 9.87 -58.89 -0.58 -17.66 16 12 C 0.09 4.65 5.32 71.98 0.38 5.04 16 13 C 0.03 1.98 5.34 29.85 0.16 2.14 16 14 C -0.55 -32.99 9.11 25.60 0.23 -32.75 16 15 H 0.06 3.62 7.74 -2.91 -0.02 3.59 16 16 C 0.01 0.42 5.46 84.65 0.46 0.88 16 17 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 18 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.08 0.81 7.87 -2.39 -0.02 0.79 16 24 H 0.08 0.81 7.89 -2.39 -0.02 0.79 16 25 H 0.19 1.82 6.99 -2.91 -0.02 1.80 16 26 H 0.08 0.54 8.11 -2.39 -0.02 0.53 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 2.68 8.13 -2.39 -0.02 2.66 16 30 H 0.05 2.67 8.13 -2.39 -0.02 2.66 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -78.77 307.08 5.52 -73.24 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: 1.11 Total: -3.46 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.27 Total: -12.37 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.88 Total: -53.49 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -1.28 Total: 5.59 kcal Total: -78.77 5.52 -73.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172202280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.899 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds