Wall clock time and date at job start Mon Mar 30 2020 01:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00192 * 3 2 1 5 5 H 1.48507 * 109.46832 * 30.00321 * 3 2 1 6 6 H 1.48493 * 109.47095 * 150.00042 * 3 2 1 7 7 C 1.37881 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99961 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00149 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47497 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47182 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54259 * 68.37736 * 12 11 10 14 14 O 1.42095 * 110.54005 * 291.62261 * 12 11 10 15 15 C 1.76204 * 104.44631 * 180.02562 * 12 11 10 16 16 C 1.38289 * 119.96876 * 270.01939 * 15 12 11 17 17 C 1.38240 * 120.11036 * 180.02562 * 16 15 12 18 18 C 1.38173 * 120.05812 * 359.67646 * 17 16 15 19 19 C 1.38709 * 119.93675 * 0.57760 * 18 17 16 20 20 O 1.35905 * 120.05346 * 179.72475 * 19 18 17 21 21 C 1.38116 * 119.97372 * 90.00190 * 15 12 11 22 22 H 0.96993 * 120.00368 * 359.97438 * 1 2 3 23 23 H 1.09011 * 109.46888 * 60.00119 * 9 7 2 24 24 H 1.09003 * 109.47623 * 300.00286 * 9 7 2 25 25 H 1.09002 * 109.47193 * 60.00221 * 10 9 7 26 26 H 1.09003 * 109.47025 * 300.00720 * 10 9 7 27 27 H 1.08998 * 109.47044 * 60.00286 * 11 10 9 28 28 H 1.08995 * 109.47026 * 300.00372 * 11 10 9 29 29 H 1.08001 * 119.94341 * 0.02562 * 16 15 12 30 30 H 1.08006 * 119.97312 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.03009 * 180.29712 * 18 17 16 32 32 H 0.96705 * 113.99576 * 269.72355 * 20 19 18 33 33 H 1.08003 * 120.03068 * 0.02562 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 16 6.1562 -4.3468 -0.0016 13 8 5.8602 -4.9799 -1.2388 14 8 5.8601 -4.9807 1.2352 15 6 7.9115 -4.1924 -0.0007 16 6 8.6002 -4.1309 -1.1983 17 6 9.9773 -4.0103 -1.2011 18 6 10.6686 -3.9443 -0.0065 19 6 9.9806 -4.0111 1.1960 20 8 10.6587 -3.9520 2.3724 21 6 8.5984 -4.1327 1.1961 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8890 24 1 3.8746 -0.6800 -0.8911 25 1 3.6580 -3.1505 -0.8908 26 1 3.6585 -3.1502 0.8892 27 1 5.9148 -2.1227 0.8890 28 1 5.9149 -2.1227 -0.8909 29 1 8.0612 -4.1771 -2.1331 30 1 10.5129 -3.9629 -2.1377 31 1 11.7440 -3.8453 -0.0092 32 1 10.9323 -4.8150 2.7124 33 1 8.0601 -4.1809 2.1312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183993237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:14 Heat of formation + Delta-G solvation = -96.734537 kcal Electronic energy + Delta-G solvation = -17903.815623 eV Core-core repulsion = 14828.973761 eV Total energy + Delta-G solvation = -3074.841863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03238 -37.13628 -36.94315 -35.84327 -34.84956 -32.23474 -31.66115 -30.16932 -28.41271 -24.02230 -23.28347 -23.01213 -20.49311 -19.50629 -18.39863 -17.19239 -16.91081 -16.45815 -16.32320 -15.75856 -15.48737 -15.18865 -14.39170 -14.21026 -14.15334 -13.06815 -12.87693 -12.77302 -12.37240 -12.28194 -12.15916 -11.96886 -11.88381 -11.64314 -11.53475 -11.00930 -10.95880 -10.62078 -10.10944 -9.89218 -9.82562 -9.50912 -9.27461 -9.12909 -8.59343 -6.09044 -4.08548 0.07144 0.50629 0.83267 2.87056 3.04396 3.26598 3.34529 3.36413 3.73290 3.93094 4.19435 4.39972 4.49621 4.58895 4.77985 4.92614 4.97661 5.13934 5.23864 5.25590 5.45043 5.70194 5.70613 5.83826 5.88729 6.11580 6.22714 6.28524 6.63842 7.10980 7.22580 7.24794 7.69906 8.46573 8.95285 9.51974 11.04207 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026988 B = 0.004248 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.252626 B = 6590.216987 C = 6938.944026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.100 4.100 11 C -0.590 4.590 12 S 2.486 3.514 13 O -0.938 6.938 14 O -0.938 6.938 15 C -0.641 4.641 16 C -0.034 4.034 17 C -0.125 4.125 18 C -0.097 4.097 19 C 0.083 3.917 20 O -0.495 6.495 21 C -0.050 4.050 22 H 0.264 0.736 23 H 0.021 0.979 24 H 0.017 0.983 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.392 0.608 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.125 -7.874 -0.119 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.044 4.044 10 C -0.139 4.139 11 C -0.722 4.722 12 S 2.667 3.333 13 O -0.935 6.935 14 O -0.936 6.936 15 C -0.726 4.726 16 C -0.052 4.052 17 C -0.143 4.143 18 C -0.115 4.115 19 C 0.038 3.962 20 O -0.306 6.306 21 C -0.069 4.069 22 H 0.074 0.926 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.248 0.752 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 22.479 -7.955 -0.168 23.845 hybrid contribution 1.207 1.150 0.085 1.669 sum 23.685 -6.805 -0.082 24.644 Atomic orbital electron populations 1.69904 1.06290 1.27010 1.50642 1.25017 0.94745 0.99152 0.94426 0.86789 0.80358 0.83647 0.78558 1.20197 1.21252 1.19026 1.21122 0.89183 0.94804 1.51437 0.90667 1.19546 0.97386 0.90572 0.96877 1.21390 0.86271 1.03099 1.03142 1.30327 1.09349 1.20743 1.11772 1.05933 0.73703 0.78838 0.74825 1.93556 1.82710 1.72860 1.44350 1.93554 1.82742 1.72854 1.44419 1.30848 1.27111 1.15966 0.98645 1.21070 0.94854 0.92278 0.97037 1.21218 0.94259 1.00715 0.98157 1.21737 1.00853 0.96844 0.92091 1.18505 0.90142 1.01897 0.85637 1.84858 1.75085 1.34703 1.35920 1.21267 0.94242 0.93563 0.97816 0.92600 0.96056 0.96486 0.90694 0.90687 0.84916 0.84909 0.83578 0.84508 0.84706 0.75160 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.01 -0.12 4.04 -27.89 -0.11 -0.23 16 10 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 11 C -0.59 -8.19 5.98 37.16 0.22 -7.97 16 12 S 2.49 34.56 5.16 -107.50 -0.55 34.01 16 13 O -0.94 -15.25 17.13 -57.54 -0.99 -16.24 16 14 O -0.94 -15.50 17.12 -57.54 -0.99 -16.49 16 15 C -0.64 -7.57 5.65 -39.61 -0.22 -7.80 16 16 C -0.03 -0.35 9.47 -39.56 -0.37 -0.72 16 17 C -0.12 -1.06 10.04 -39.60 -0.40 -1.46 16 18 C -0.10 -0.83 9.99 -39.43 -0.39 -1.22 16 19 C 0.08 0.83 6.70 -39.22 -0.26 0.57 16 20 O -0.50 -4.28 13.50 -19.44 -0.26 -4.54 16 21 C -0.05 -0.56 9.41 -39.43 -0.37 -0.93 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.48 7.20 -51.92 -0.37 0.11 16 24 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.15 1.32 7.57 -52.49 -0.40 0.93 16 30 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.39 1.46 9.06 45.56 0.41 1.87 16 33 H 0.15 1.59 7.57 -52.48 -0.40 1.19 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -36.34 300.62 -7.91 -44.24 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.27 Total: -0.28 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: -2.48 Total: -35.08 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.23 Total: -37.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 34.56 SS G_CDS: -0.55 Total: 34.01 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -36.34 -7.91 -44.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183993237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.490 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds