Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00192 * 3 2 1 5 5 H 1.48507 * 109.46832 * 30.00321 * 3 2 1 6 6 H 1.48493 * 109.47095 * 150.00042 * 3 2 1 7 7 C 1.37881 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99961 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00149 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47497 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47182 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54259 * 68.37736 * 12 11 10 14 14 O 1.42095 * 110.54005 * 291.62261 * 12 11 10 15 15 C 1.76204 * 104.44631 * 180.02562 * 12 11 10 16 16 C 1.38289 * 119.96876 * 270.01939 * 15 12 11 17 17 C 1.38240 * 120.11036 * 180.02562 * 16 15 12 18 18 C 1.38173 * 120.05812 * 359.67646 * 17 16 15 19 19 C 1.38709 * 119.93675 * 0.57760 * 18 17 16 20 20 O 1.35905 * 120.05346 * 179.72475 * 19 18 17 21 21 C 1.38116 * 119.97372 * 90.00190 * 15 12 11 22 22 H 0.96993 * 120.00368 * 359.97438 * 1 2 3 23 23 H 1.09011 * 109.46888 * 60.00119 * 9 7 2 24 24 H 1.09003 * 109.47623 * 300.00286 * 9 7 2 25 25 H 1.09002 * 109.47193 * 60.00221 * 10 9 7 26 26 H 1.09003 * 109.47025 * 300.00720 * 10 9 7 27 27 H 1.08998 * 109.47044 * 60.00286 * 11 10 9 28 28 H 1.08995 * 109.47026 * 300.00372 * 11 10 9 29 29 H 1.08001 * 119.94341 * 0.02562 * 16 15 12 30 30 H 1.08006 * 119.97312 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.03009 * 180.29712 * 18 17 16 32 32 H 0.96705 * 113.99576 * 269.72355 * 20 19 18 33 33 H 1.08003 * 120.03068 * 0.02562 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 16 6.1562 -4.3468 -0.0016 13 8 5.8602 -4.9799 -1.2388 14 8 5.8601 -4.9807 1.2352 15 6 7.9115 -4.1924 -0.0007 16 6 8.6002 -4.1309 -1.1983 17 6 9.9773 -4.0103 -1.2011 18 6 10.6686 -3.9443 -0.0065 19 6 9.9806 -4.0111 1.1960 20 8 10.6587 -3.9520 2.3724 21 6 8.5984 -4.1327 1.1961 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8890 24 1 3.8746 -0.6800 -0.8911 25 1 3.6580 -3.1505 -0.8908 26 1 3.6585 -3.1502 0.8892 27 1 5.9148 -2.1227 0.8890 28 1 5.9149 -2.1227 -0.8909 29 1 8.0612 -4.1771 -2.1331 30 1 10.5129 -3.9629 -2.1377 31 1 11.7440 -3.8453 -0.0092 32 1 10.9323 -4.8150 2.7124 33 1 8.0601 -4.1809 2.1312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183993237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -125.231951 kcal Electronic energy + Delta-G solvation = -17905.051364 eV Core-core repulsion = 14828.973761 eV Total energy + Delta-G solvation = -3076.077603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72474 -38.21581 -37.72875 -37.04080 -36.50905 -34.24980 -32.39639 -30.88303 -30.16111 -25.50166 -24.35409 -23.73058 -22.15404 -20.39526 -19.41137 -18.95271 -17.96720 -17.37160 -17.32317 -16.84643 -16.51249 -16.20952 -15.89802 -15.71339 -14.86447 -14.83030 -14.10916 -13.70129 -13.67304 -13.49194 -13.21791 -13.19707 -13.15639 -12.91201 -12.69695 -12.55820 -12.41368 -11.84205 -11.63831 -11.50910 -11.40073 -11.12491 -10.76592 -10.41614 -9.84702 -8.29107 -6.34919 -0.99373 -0.28399 0.12695 1.37661 1.40156 1.51615 1.89135 2.28348 2.37044 2.84584 3.01701 3.06246 3.29571 3.70040 3.76143 3.92020 4.01367 4.06489 4.33959 4.35528 4.53727 4.62692 4.80815 4.83278 4.96056 4.96392 5.17677 5.20675 5.34957 5.46711 5.63258 5.65417 6.26090 6.73476 6.75096 7.29758 8.87883 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026988 B = 0.004248 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.252626 B = 6590.216987 C = 6938.944026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.543 4.543 8 H 0.031 0.969 9 C -0.007 4.007 10 C -0.106 4.106 11 C -0.585 4.585 12 S 2.500 3.500 13 O -0.967 6.967 14 O -0.973 6.973 15 C -0.643 4.643 16 C -0.048 4.048 17 C -0.118 4.118 18 C -0.091 4.091 19 C 0.081 3.919 20 O -0.505 6.505 21 C -0.071 4.071 22 H 0.267 0.733 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.413 0.587 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.055 -6.579 -0.621 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.582 4.582 8 H 0.050 0.950 9 C -0.045 4.045 10 C -0.145 4.145 11 C -0.717 4.717 12 S 2.686 3.314 13 O -0.965 6.965 14 O -0.971 6.971 15 C -0.731 4.731 16 C -0.067 4.067 17 C -0.136 4.136 18 C -0.109 4.109 19 C 0.035 3.965 20 O -0.318 6.318 21 C -0.091 4.091 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.174 0.826 28 H 0.180 0.820 29 H 0.173 0.827 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.272 0.728 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 26.385 -6.700 -0.660 27.230 hybrid contribution 0.040 0.645 0.261 0.697 sum 26.425 -6.055 -0.399 27.112 Atomic orbital electron populations 1.70077 1.08511 1.28304 1.52396 1.26089 0.95662 1.03815 0.93908 0.85615 0.79669 0.77707 0.79420 1.18841 1.21197 1.16275 1.21555 0.92320 0.93327 1.50948 0.95049 1.19526 0.93736 0.93413 0.97874 1.21253 0.90070 1.00574 1.02640 1.30230 1.05460 1.21480 1.14481 1.05068 0.74583 0.78337 0.73417 1.93512 1.83971 1.73690 1.45282 1.93506 1.84080 1.73821 1.45645 1.30263 1.24699 1.18423 0.99763 1.21350 0.96083 0.92498 0.96733 1.21612 0.93441 0.98926 0.99658 1.22107 1.02345 0.95128 0.91345 1.18623 0.89704 1.01458 0.86681 1.84804 1.74767 1.36601 1.35652 1.21372 0.95307 0.94858 0.97545 0.92433 0.94961 0.94833 0.91307 0.91609 0.82592 0.82005 0.82697 0.81185 0.81815 0.72759 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.00 0.11 5.47 84.66 0.46 0.58 16 3 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 7 C -0.54 -31.37 9.66 25.60 0.25 -31.12 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.31 4.04 29.84 0.12 -0.19 16 10 C -0.11 -4.00 5.16 30.59 0.16 -3.84 16 11 C -0.59 -15.24 5.98 71.98 0.43 -14.81 16 12 S 2.50 68.70 5.16 -56.49 -0.29 68.41 16 13 O -0.97 -31.50 17.13 -127.65 -2.19 -33.69 16 14 O -0.97 -32.78 17.12 -127.65 -2.19 -34.96 16 15 C -0.64 -14.20 5.65 22.25 0.13 -14.08 16 16 C -0.05 -0.87 9.47 22.28 0.21 -0.65 16 17 C -0.12 -1.54 10.04 22.25 0.22 -1.31 16 18 C -0.09 -1.19 9.99 22.37 0.22 -0.97 16 19 C 0.08 1.40 6.70 22.51 0.15 1.55 16 20 O -0.50 -7.40 13.50 -92.48 -1.25 -8.65 16 21 C -0.07 -1.51 9.41 22.36 0.21 -1.30 16 22 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16 23 H 0.03 1.37 7.20 -2.38 -0.02 1.36 16 24 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.16 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.16 2.45 7.57 -2.91 -0.02 2.43 16 30 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.41 2.03 9.06 -74.05 -0.67 1.35 16 33 H 0.15 3.04 7.57 -2.91 -0.02 3.02 16 Total: -1.00 -80.69 300.62 -0.77 -81.46 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.40 Total: 8.34 kcal Atomic # 6 Polarization: -68.72 SS G_CDS: 2.56 Total: -66.15 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.30 Total: -59.79 kcal Atomic # 8 Polarization: -71.68 SS G_CDS: -5.62 Total: -77.30 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Atomic # 16 Polarization: 68.70 SS G_CDS: -0.29 Total: 68.41 kcal Total: -80.69 -0.77 -81.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183993237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.770 kcal (2) G-P(sol) polarization free energy of solvation -80.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds