Wall clock time and date at job start Mon Mar 30 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46977 * 2 1 4 4 C 1.52999 * 109.47174 * 120.00054 * 2 1 3 5 5 C 1.50697 * 109.46969 * 185.00151 * 4 2 1 6 6 H 1.07998 * 120.00242 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99857 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00088 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00020 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47611 * 119.99708 * 9 7 5 12 12 H 1.48500 * 109.47073 * 239.99601 * 9 7 5 13 13 S 1.81401 * 109.46956 * 239.99909 * 2 1 3 14 14 C 1.81400 * 102.99921 * 64.99851 * 13 2 1 15 15 C 1.50702 * 109.47211 * 180.02562 * 14 13 2 16 16 C 1.38237 * 119.98736 * 89.99614 * 15 14 13 17 17 C 1.38215 * 120.01101 * 179.70222 * 16 15 14 18 18 C 1.38345 * 119.98958 * 0.28207 * 17 16 15 19 19 Cl 1.73598 * 120.01481 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97486 * 359.97438 * 18 17 16 21 21 C 1.38215 * 119.98719 * 359.97438 * 20 18 17 22 22 H 1.09005 * 109.47188 * 299.99950 * 1 2 3 23 23 H 1.09002 * 109.47297 * 59.99846 * 1 2 3 24 24 H 1.09002 * 109.47368 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47040 * 304.99717 * 4 2 1 26 26 H 1.09004 * 109.47023 * 64.99673 * 4 2 1 27 27 H 0.97000 * 120.00049 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47115 * 60.00121 * 14 13 2 29 29 H 1.09000 * 109.47547 * 300.00256 * 14 13 2 30 30 H 1.08002 * 119.99593 * 359.97438 * 16 15 14 31 31 H 1.08000 * 120.00509 * 180.30231 * 17 16 15 32 32 H 1.08002 * 120.00892 * 180.02562 * 20 18 17 33 33 H 1.08000 * 119.99948 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1935 2.3577 8 7 3.5765 -1.8378 3.2995 9 14 6.0921 -1.0623 2.4361 10 1 6.5838 -0.2928 1.2650 11 1 6.4872 -0.3667 3.6872 12 1 6.6855 -2.4234 2.4179 13 16 2.1346 -0.8552 -1.4811 14 6 1.5663 0.2152 -2.8309 15 6 1.9972 -0.3696 -4.1513 16 6 1.1714 -1.2566 -4.8164 17 6 1.5634 -1.7885 -6.0304 18 6 2.7849 -1.4377 -6.5770 19 17 3.2776 -2.1049 -8.1021 20 6 3.6132 -0.5541 -5.9084 21 6 3.2198 -0.0219 -4.6950 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2056 27 1 4.0608 -2.2446 4.0349 28 1 2.0000 1.2084 -2.7142 29 1 0.4791 0.2882 -2.8037 30 1 0.2179 -1.5305 -4.3896 31 1 0.9161 -2.4777 -6.5523 32 1 4.5667 -0.2795 -6.3348 33 1 3.8661 0.6682 -4.1730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188208323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:04 Heat of formation + Delta-G solvation = -7.184160 kcal Electronic energy + Delta-G solvation = -15337.287643 eV Core-core repulsion = 12707.038141 eV Total energy + Delta-G solvation = -2630.249502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41815 -36.63501 -34.54910 -32.65247 -32.01179 -31.16309 -27.69257 -26.68642 -23.31025 -22.93348 -21.71095 -20.39357 -17.22507 -16.34047 -15.81353 -15.65417 -15.24470 -14.65265 -14.45747 -13.78289 -13.65663 -13.43553 -13.05776 -12.96148 -12.36448 -11.91897 -11.73922 -11.59298 -11.55149 -11.46199 -10.93464 -10.92222 -10.71539 -10.49120 -10.36898 -9.49613 -9.24078 -9.13230 -9.04233 -8.51021 -8.35343 -6.93621 -6.00648 -4.01326 0.91416 1.21198 2.00387 2.38052 3.29940 3.33303 3.40684 3.45752 3.66462 4.47685 4.63698 4.68935 4.78475 5.09124 5.24046 5.37050 5.45772 5.51053 5.62641 5.70178 5.76148 5.86190 5.94618 6.10724 6.12211 6.32659 6.46290 6.57687 6.68226 6.70967 7.51549 7.62552 7.97170 8.35298 9.03637 9.62216 11.10917 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.004116 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.126629 B = 6800.374134 C = 7675.658804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 H 0.074 0.926 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 S -0.218 6.218 14 C -0.073 4.073 15 C -0.051 4.051 16 C -0.094 4.094 17 C -0.111 4.111 18 C -0.038 4.038 19 Cl -0.079 7.079 20 C -0.110 4.110 21 C -0.091 4.091 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.026 0.974 27 H 0.260 0.740 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 3.342 -18.426 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 S 0.012 5.988 14 C -0.221 4.221 15 C -0.052 4.052 16 C -0.113 4.113 17 C -0.129 4.129 18 C -0.065 4.065 19 Cl -0.050 7.050 20 C -0.128 4.128 21 C -0.111 4.111 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.395 2.255 -18.419 19.069 hybrid contribution 0.416 1.045 0.169 1.137 sum -3.978 3.300 -18.250 18.968 Atomic orbital electron populations 1.22118 0.95382 1.02246 1.00638 1.23428 0.95973 1.01518 0.96604 0.90789 1.19017 0.96527 0.95629 0.88679 1.21280 0.91538 1.34319 1.07986 0.91809 1.24990 0.98432 0.95282 0.95674 1.69967 1.35471 1.36100 1.12153 0.86533 0.85837 0.77837 0.77848 1.19583 1.21155 1.21031 1.87498 1.75546 1.36747 0.98995 1.22393 1.03514 1.01738 0.94408 1.19453 0.94588 0.96794 0.94386 1.21011 1.00239 0.96085 0.94007 1.20989 0.95100 1.00671 0.96169 1.20909 0.96441 0.99967 0.89206 1.98358 1.91526 1.84829 1.30319 1.21014 0.99653 0.96891 0.95275 1.21060 0.95651 0.99837 0.94560 0.92183 0.94072 0.91914 0.94981 0.95581 0.93064 0.89650 0.89791 0.84889 0.84998 0.84950 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.10 37.16 0.34 -2.00 16 2 C -0.05 -0.92 2.77 -26.73 -0.07 -1.00 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.04 0.99 4.45 -27.88 -0.12 0.87 16 5 C -0.51 -14.20 8.53 -34.44 -0.29 -14.50 16 6 H 0.06 1.75 7.60 -52.49 -0.40 1.35 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 S -0.22 -4.12 20.44 -107.50 -2.20 -6.32 16 14 C -0.07 -1.01 5.76 36.01 0.21 -0.80 16 15 C -0.05 -0.66 5.14 -104.62 -0.54 -1.20 16 16 C -0.09 -1.10 9.70 -39.59 -0.38 -1.48 16 17 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 18 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 19 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 20 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 21 C -0.09 -1.12 9.70 -39.59 -0.38 -1.51 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.56 6.92 -51.93 -0.36 0.20 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.08 1.11 8.09 -51.92 -0.42 0.69 16 29 H 0.08 1.04 7.09 -51.92 -0.37 0.67 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -29.77 311.08 -10.16 -39.93 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.49 Total: -2.72 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.38 Total: -24.02 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.20 Total: -6.32 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.77 -10.16 -39.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188208323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.746 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds