Wall clock time and date at job start Mon Mar 30 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 S 1.81399 * 109.47147 * 119.99916 * 2 1 3 14 14 C 1.81394 * 103.00187 * 294.99891 * 13 2 1 15 15 C 1.50704 * 109.47240 * 179.97438 * 14 13 2 16 16 C 1.38237 * 119.98805 * 269.72361 * 15 14 13 17 17 C 1.38215 * 120.01513 * 179.72456 * 16 15 14 18 18 C 1.38358 * 119.98003 * 0.55679 * 17 16 15 19 19 Cl 1.73604 * 120.00902 * 179.70334 * 18 17 16 20 20 C 1.38351 * 119.97629 * 359.71658 * 18 17 16 21 21 C 1.38212 * 119.98684 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 26 26 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 27 27 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47204 * 300.00198 * 14 13 2 29 29 H 1.09004 * 109.47390 * 59.99926 * 14 13 2 30 30 H 1.08001 * 119.99101 * 0.02562 * 16 15 14 31 31 H 1.07994 * 120.01213 * 180.27561 * 17 16 15 32 32 H 1.07999 * 120.00142 * 179.97438 * 20 18 17 33 33 H 1.08000 * 119.99515 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 16 2.1346 -0.8551 1.4811 14 6 1.5665 0.2153 2.8309 15 6 1.9974 -0.3696 4.1512 16 6 1.1692 -1.2520 4.8193 17 6 1.5663 -1.7932 6.0275 18 6 2.7881 -1.4425 6.5739 19 17 3.2843 -2.1158 8.0951 20 6 3.6141 -0.5549 5.9075 21 6 3.2182 -0.0186 4.6968 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7516 -1.7716 -1.2056 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2448 -4.0348 28 1 2.0002 1.2085 2.7141 29 1 0.4792 0.2882 2.8038 30 1 0.2137 -1.5224 4.3946 31 1 0.9212 -2.4860 6.5472 32 1 4.5678 -0.2806 6.3338 33 1 3.8627 0.6746 4.1768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188208346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:05 Heat of formation + Delta-G solvation = -20.939543 kcal Electronic energy + Delta-G solvation = -15337.901826 eV Core-core repulsion = 12707.055845 eV Total energy + Delta-G solvation = -2630.845980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.30830 -37.49017 -36.36970 -34.06559 -33.53939 -32.03679 -29.47458 -27.79078 -25.22278 -23.81514 -22.81448 -21.93555 -18.49321 -18.12984 -17.16254 -16.63311 -16.52697 -16.22849 -15.96871 -14.96610 -14.57901 -14.51251 -14.36355 -14.25174 -13.77516 -13.64009 -13.25390 -12.96751 -12.68700 -12.48419 -12.43724 -12.39963 -12.28201 -11.91788 -11.76847 -11.38420 -11.18297 -10.67739 -10.43480 -10.00754 -9.48546 -8.41963 -8.18115 -6.25272 -0.07397 0.33577 1.09709 1.14541 1.39139 1.40902 1.53412 1.91764 2.42705 2.74175 3.17255 3.69173 3.75527 3.96175 4.11218 4.17170 4.27062 4.35316 4.53359 4.57419 4.61626 4.74900 4.92529 5.00674 5.04330 5.20766 5.24055 5.24374 5.41097 5.54199 5.56280 5.80510 5.80621 6.23016 6.87596 7.42104 8.94119 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.004119 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.471745 B = 6795.518403 C = 7671.553147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 H 0.075 0.925 4 C 0.045 3.955 5 C -0.521 4.521 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.957 3.043 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.278 1.278 13 S -0.277 6.277 14 C -0.048 4.048 15 C -0.070 4.070 16 C -0.095 4.095 17 C -0.113 4.113 18 C -0.044 4.044 19 Cl -0.071 7.071 20 C -0.115 4.115 21 C -0.099 4.099 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.056 0.944 25 H -0.006 1.006 26 H 0.010 0.990 27 H 0.262 0.738 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 4.086 20.293 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 H 0.093 0.907 4 C 0.007 3.993 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.203 1.203 13 S -0.047 6.047 14 C -0.195 4.195 15 C -0.071 4.071 16 C -0.115 4.115 17 C -0.132 4.132 18 C -0.071 4.071 19 Cl -0.043 7.043 20 C -0.133 4.133 21 C -0.119 4.119 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.013 0.987 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.346 3.009 20.283 20.960 hybrid contribution 0.385 0.800 -0.611 1.078 sum -3.961 3.809 19.671 20.424 Atomic orbital electron populations 1.22035 0.92451 1.02498 1.02517 1.23159 0.98321 1.00404 0.94745 0.90682 1.18819 0.95454 0.94176 0.90821 1.21622 0.93019 1.33682 1.07658 0.91894 1.25860 1.03224 0.95094 0.95460 1.70091 1.37327 1.37272 1.12913 0.85510 0.80161 0.77854 0.78260 1.18668 1.20883 1.20319 1.87579 1.76836 1.39073 1.01233 1.22344 1.04570 1.00506 0.92046 1.19484 0.95377 0.98065 0.94176 1.21223 1.00637 0.95482 0.94161 1.21243 0.95202 1.00616 0.96096 1.21102 0.96654 0.99727 0.89618 1.98363 1.91378 1.84446 1.30066 1.21209 1.00327 0.96696 0.95097 1.21211 0.95654 1.00061 0.94989 0.91680 0.90753 0.92480 0.98731 0.97176 0.92954 0.88726 0.87763 0.83493 0.83097 0.83472 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.10 71.98 0.66 -3.55 16 2 C -0.04 -1.49 2.77 30.59 0.08 -1.40 16 3 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 4 C 0.05 2.33 4.45 29.85 0.13 2.47 16 5 C -0.52 -29.38 8.53 25.60 0.22 -29.16 16 6 H 0.06 3.48 7.60 -2.91 -0.02 3.46 16 7 C 0.00 0.05 5.46 84.65 0.46 0.51 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 S -0.28 -10.33 20.44 -56.49 -1.15 -11.49 16 14 C -0.05 -1.21 5.76 71.24 0.41 -0.80 16 15 C -0.07 -1.66 5.14 -19.86 -0.10 -1.76 16 16 C -0.10 -2.01 9.70 22.26 0.22 -1.80 16 17 C -0.11 -2.23 9.83 22.29 0.22 -2.02 16 18 C -0.04 -0.91 6.32 22.33 0.14 -0.77 16 19 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.44 16 20 C -0.11 -2.40 9.83 22.29 0.22 -2.18 16 21 C -0.10 -2.27 9.70 22.26 0.22 -2.05 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.07 1.80 6.92 -2.39 -0.02 1.79 16 24 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 25 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.01 0.55 8.14 -2.38 -0.02 0.54 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.09 2.23 8.09 -2.39 -0.02 2.22 16 29 H 0.10 2.22 7.08 -2.39 -0.02 2.21 16 30 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -64.63 311.08 5.04 -59.59 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.08 Total: 5.51 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 2.87 Total: -42.51 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.15 Total: -11.49 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -64.63 5.04 -59.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188208346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.652 kcal (2) G-P(sol) polarization free energy of solvation -64.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds