Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47086 * 59.99787 * 9 7 5 11 11 H 1.48496 * 109.47228 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47059 * 300.00037 * 9 7 5 13 13 S 1.81003 * 109.47194 * 239.99934 * 2 1 3 14 14 C 1.76192 * 100.00037 * 64.99821 * 13 2 1 15 15 N 1.30311 * 126.16969 * 359.69734 * 14 13 2 16 16 N 1.26102 * 117.60187 * 179.75513 * 15 14 13 17 17 C 1.29317 * 117.97714 * 0.55463 * 16 15 14 18 18 C 1.50703 * 126.06490 * 179.72521 * 17 16 15 19 19 C 1.53000 * 117.49193 * 8.59697 * 18 17 16 20 20 C 1.52998 * 60.00047 * 252.50826 * 19 18 17 21 21 S 1.76488 * 107.88025 * 359.70411 * 17 16 15 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 26 26 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 27 27 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.08999 * 115.55167 * 154.30246 * 18 17 16 29 29 H 1.08998 * 117.50607 * 0.02562 * 19 18 17 30 30 H 1.09001 * 117.49343 * 145.02051 * 19 18 17 31 31 H 1.08995 * 117.50165 * 252.51124 * 20 19 18 32 32 H 1.09006 * 117.51487 * 107.48179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.4855 0.3692 2.4951 11 1 6.5870 -1.7604 3.6498 12 1 6.6837 -1.6886 1.2276 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2421 -2.7257 15 7 0.8638 1.3363 -2.5298 16 7 0.5262 2.0040 -3.5449 17 6 0.8672 1.5536 -4.7082 18 6 0.5562 2.1974 -6.0349 19 6 -0.0555 3.5996 -6.0133 20 6 -0.9173 2.3948 -6.3962 21 16 1.7618 0.0516 -4.4668 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6055 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2057 27 1 4.0606 -2.2423 4.0363 28 1 1.2459 1.9611 -6.8452 29 1 -0.2326 4.0567 -5.0398 30 1 0.2318 4.2862 -6.8097 31 1 -1.1971 2.2888 -7.4442 32 1 -1.6619 2.0586 -5.6745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188321693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = 72.310763 kcal Electronic energy + Delta-G solvation = -15534.508013 eV Core-core repulsion = 12942.042127 eV Total energy + Delta-G solvation = -2592.465886 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76963 -37.41709 -34.68141 -32.21687 -31.01439 -27.59147 -26.86234 -23.37977 -23.28067 -22.63899 -20.95107 -19.79686 -18.90922 -16.78377 -16.43619 -16.09674 -15.52591 -14.97856 -14.60063 -14.21318 -13.48673 -13.00328 -12.65674 -12.49681 -11.86152 -11.80019 -11.71982 -11.55434 -11.32825 -10.91939 -10.88217 -10.68949 -10.62841 -10.23733 -10.20189 -10.03361 -9.58889 -9.49799 -9.33783 -9.24400 -8.45510 -7.26309 -6.10652 -4.14039 0.44049 0.80862 1.36126 1.86205 2.64505 2.75359 3.30451 3.34507 3.37763 3.60027 4.06715 4.39337 4.54243 4.60535 4.72967 5.13969 5.26731 5.37022 5.48294 5.58206 5.64953 5.77286 5.80306 5.92504 6.06213 6.46234 6.54188 6.70150 7.43162 7.46838 7.85524 8.20746 8.73283 8.90457 9.51011 11.00174 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.004268 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.941222 B = 6559.001778 C = 6851.714879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 H 0.094 0.906 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 S 0.060 5.940 14 C 0.008 3.992 15 N -0.276 5.276 16 N -0.251 5.251 17 C 0.039 3.961 18 C -0.087 4.087 19 C -0.150 4.150 20 C -0.156 4.156 21 S 0.075 5.925 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.028 0.972 27 H 0.263 0.737 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 5.170 -18.203 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 H 0.112 0.888 4 C -0.002 4.002 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.200 1.200 13 S 0.294 5.706 14 C -0.377 4.377 15 N -0.118 5.118 16 N -0.087 5.087 17 C -0.246 4.246 18 C -0.109 4.109 19 C -0.189 4.189 20 C -0.195 4.195 21 S 0.316 5.684 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.037 4.168 -17.831 19.281 hybrid contribution 0.511 1.069 0.283 1.218 sum -5.526 5.237 -17.548 19.128 Atomic orbital electron populations 1.22102 0.93958 1.02020 1.02559 1.23815 0.97750 1.02836 0.95163 0.88817 1.19117 0.96538 0.95636 0.88896 1.21214 0.91434 1.35285 1.08760 0.91926 1.24979 0.98642 0.94931 0.95426 1.69939 1.35888 1.35352 1.11881 0.86628 0.85387 0.78407 0.77532 1.20110 1.21225 1.19968 1.86306 1.64099 1.25582 0.94634 1.32191 1.02475 1.02208 1.00853 1.71762 1.14611 1.03867 1.21581 1.70640 1.18419 1.25233 0.94379 1.28636 1.02211 0.95794 0.97924 1.20304 0.98359 1.00923 0.91347 1.23055 1.01881 0.89762 1.04242 1.23080 0.91678 1.02126 1.02635 1.85560 1.55205 1.25179 1.02432 0.91933 0.91682 0.92466 0.94002 0.95387 0.92704 0.85405 0.87315 0.87855 0.87735 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.01 37.16 0.33 -2.33 16 2 C -0.07 -1.35 2.28 -26.73 -0.06 -1.41 16 3 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 4 C 0.04 0.91 4.44 -27.88 -0.12 0.79 16 5 C -0.53 -14.28 8.53 -34.44 -0.29 -14.58 16 6 H 0.06 1.67 7.60 -52.48 -0.40 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 S 0.06 1.15 21.07 -107.50 -2.26 -1.11 16 14 C 0.01 0.15 7.55 52.12 0.39 0.54 16 15 N -0.28 -5.13 9.07 31.32 0.28 -4.85 16 16 N -0.25 -4.24 11.13 33.57 0.37 -3.86 16 17 C 0.04 0.55 7.32 -13.34 -0.10 0.45 16 18 C -0.09 -0.85 6.33 -91.77 -0.58 -1.43 16 19 C -0.15 -1.29 10.14 -26.73 -0.27 -1.56 16 20 C -0.16 -1.27 10.23 -26.73 -0.27 -1.54 16 21 S 0.08 1.06 23.54 -107.50 -2.53 -1.47 16 22 H 0.06 1.12 5.90 -51.93 -0.31 0.82 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.11 1.13 7.90 -51.93 -0.41 0.71 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -29.57 303.24 -8.98 -38.54 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.05 Total: -3.47 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.07 Total: -19.44 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.39 Total: -33.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -4.79 Total: -2.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.57 -8.98 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188321693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.854 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds