Wall clock time and date at job start Mon Mar 30 2020 01:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08996 * 109.47853 * 2 1
4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3
5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1
6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2
7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2
8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.47086 * 59.99787 * 9 7 5
11 11 H 1.48496 * 109.47228 * 179.97438 * 9 7 5
12 12 H 1.48493 * 109.47059 * 300.00037 * 9 7 5
13 13 S 1.81003 * 109.47194 * 239.99934 * 2 1 3
14 14 C 1.76192 * 100.00037 * 64.99821 * 13 2 1
15 15 N 1.30311 * 126.16969 * 359.69734 * 14 13 2
16 16 N 1.26102 * 117.60187 * 179.75513 * 15 14 13
17 17 C 1.29317 * 117.97714 * 0.55463 * 16 15 14
18 18 C 1.50703 * 126.06490 * 179.72521 * 17 16 15
19 19 C 1.53000 * 117.49193 * 8.59697 * 18 17 16
20 20 C 1.52998 * 60.00047 * 252.50826 * 19 18 17
21 21 S 1.76488 * 107.88025 * 359.70411 * 17 16 15
22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3
23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3
24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3
25 25 H 1.08996 * 109.46945 * 304.99450 * 4 2 1
26 26 H 1.09000 * 109.47314 * 64.99572 * 4 2 1
27 27 H 0.97002 * 119.99753 * 180.02562 * 8 7 5
28 28 H 1.08999 * 115.55167 * 154.30246 * 18 17 16
29 29 H 1.08998 * 117.50607 * 0.02562 * 19 18 17
30 30 H 1.09001 * 117.49343 * 145.02051 * 19 18 17
31 31 H 1.08995 * 117.50165 * 252.51124 * 20 19 18
32 32 H 1.09006 * 117.51487 * 107.48179 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 3.5419 -0.6150 1.3127
6 1 4.0790 -0.0855 0.5396
7 6 4.2304 -1.1927 2.3583
8 7 3.5763 -1.8361 3.3005
9 14 6.0921 -1.0616 2.4366
10 1 6.4855 0.3692 2.4951
11 1 6.5870 -1.7604 3.6498
12 1 6.6837 -1.6886 1.2276
13 16 2.1333 -0.8533 -1.4779
14 6 1.5439 0.2421 -2.7257
15 7 0.8638 1.3363 -2.5298
16 7 0.5262 2.0040 -3.5449
17 6 0.8672 1.5536 -4.7082
18 6 0.5562 2.1974 -6.0349
19 6 -0.0555 3.5996 -6.0133
20 6 -0.9173 2.3948 -6.3962
21 16 1.7618 0.0516 -4.4668
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 1.6055 -0.2618 2.1370
26 1 1.7516 -1.7716 1.2057
27 1 4.0606 -2.2423 4.0363
28 1 1.2459 1.9611 -6.8452
29 1 -0.2326 4.0567 -5.0398
30 1 0.2318 4.2862 -6.8097
31 1 -1.1971 2.2888 -7.4442
32 1 -1.6619 2.0586 -5.6745
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000188321693.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:26:27
Heat of formation + Delta-G solvation = 72.310763 kcal
Electronic energy + Delta-G solvation = -15534.508013 eV
Core-core repulsion = 12942.042127 eV
Total energy + Delta-G solvation = -2592.465886 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.76963 -37.41709 -34.68141 -32.21687 -31.01439 -27.59147 -26.86234 -23.37977
-23.28067 -22.63899 -20.95107 -19.79686 -18.90922 -16.78377 -16.43619 -16.09674
-15.52591 -14.97856 -14.60063 -14.21318 -13.48673 -13.00328 -12.65674 -12.49681
-11.86152 -11.80019 -11.71982 -11.55434 -11.32825 -10.91939 -10.88217 -10.68949
-10.62841 -10.23733 -10.20189 -10.03361 -9.58889 -9.49799 -9.33783 -9.24400
-8.45510 -7.26309 -6.10652 -4.14039 0.44049 0.80862 1.36126 1.86205
2.64505 2.75359 3.30451 3.34507 3.37763 3.60027 4.06715 4.39337
4.54243 4.60535 4.72967 5.13969 5.26731 5.37022 5.48294 5.58206
5.64953 5.77286 5.80306 5.92504 6.06213 6.46234 6.54188 6.70150
7.43162 7.46838 7.85524 8.20746 8.73283 8.90457 9.51011 11.00174
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.036170 B = 0.004268 C = 0.004086
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 773.941222 B = 6559.001778 C = 6851.714879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.065 4.065
3 H 0.094 0.906
4 C 0.037 3.963
5 C -0.528 4.528
6 H 0.063 0.937
7 C 0.062 3.938
8 N -0.892 5.892
9 Si 0.893 3.107
10 H -0.276 1.276
11 H -0.287 1.287
12 H -0.274 1.274
13 S 0.060 5.940
14 C 0.008 3.992
15 N -0.276 5.276
16 N -0.251 5.251
17 C 0.039 3.961
18 C -0.087 4.087
19 C -0.150 4.150
20 C -0.156 4.156
21 S 0.075 5.925
22 H 0.062 0.938
23 H 0.064 0.936
24 H 0.056 0.944
25 H 0.042 0.958
26 H 0.028 0.972
27 H 0.263 0.737
28 H 0.128 0.872
29 H 0.108 0.892
30 H 0.103 0.897
31 H 0.104 0.896
32 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.605 5.170 -18.203 20.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.196 4.196
3 H 0.112 0.888
4 C -0.002 4.002
5 C -0.567 4.567
6 H 0.081 0.919
7 C -0.140 4.140
8 N -0.531 5.531
9 Si 0.720 3.280
10 H -0.201 1.201
11 H -0.212 1.212
12 H -0.200 1.200
13 S 0.294 5.706
14 C -0.377 4.377
15 N -0.118 5.118
16 N -0.087 5.087
17 C -0.246 4.246
18 C -0.109 4.109
19 C -0.189 4.189
20 C -0.195 4.195
21 S 0.316 5.684
22 H 0.081 0.919
23 H 0.083 0.917
24 H 0.075 0.925
25 H 0.060 0.940
26 H 0.046 0.954
27 H 0.073 0.927
28 H 0.146 0.854
29 H 0.127 0.873
30 H 0.121 0.879
31 H 0.123 0.877
32 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -6.037 4.168 -17.831 19.281
hybrid contribution 0.511 1.069 0.283 1.218
sum -5.526 5.237 -17.548 19.128
Atomic orbital electron populations
1.22102 0.93958 1.02020 1.02559 1.23815 0.97750 1.02836 0.95163
0.88817 1.19117 0.96538 0.95636 0.88896 1.21214 0.91434 1.35285
1.08760 0.91926 1.24979 0.98642 0.94931 0.95426 1.69939 1.35888
1.35352 1.11881 0.86628 0.85387 0.78407 0.77532 1.20110 1.21225
1.19968 1.86306 1.64099 1.25582 0.94634 1.32191 1.02475 1.02208
1.00853 1.71762 1.14611 1.03867 1.21581 1.70640 1.18419 1.25233
0.94379 1.28636 1.02211 0.95794 0.97924 1.20304 0.98359 1.00923
0.91347 1.23055 1.01881 0.89762 1.04242 1.23080 0.91678 1.02126
1.02635 1.85560 1.55205 1.25179 1.02432 0.91933 0.91682 0.92466
0.94002 0.95387 0.92704 0.85405 0.87315 0.87855 0.87735 0.88223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.67 9.01 37.16 0.33 -2.33 16
2 C -0.07 -1.35 2.28 -26.73 -0.06 -1.41 16
3 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16
4 C 0.04 0.91 4.44 -27.88 -0.12 0.79 16
5 C -0.53 -14.28 8.53 -34.44 -0.29 -14.58 16
6 H 0.06 1.67 7.60 -52.48 -0.40 1.27 16
7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16
8 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16
9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
13 S 0.06 1.15 21.07 -107.50 -2.26 -1.11 16
14 C 0.01 0.15 7.55 52.12 0.39 0.54 16
15 N -0.28 -5.13 9.07 31.32 0.28 -4.85 16
16 N -0.25 -4.24 11.13 33.57 0.37 -3.86 16
17 C 0.04 0.55 7.32 -13.34 -0.10 0.45 16
18 C -0.09 -0.85 6.33 -91.77 -0.58 -1.43 16
19 C -0.15 -1.29 10.14 -26.73 -0.27 -1.56 16
20 C -0.16 -1.27 10.23 -26.73 -0.27 -1.54 16
21 S 0.08 1.06 23.54 -107.50 -2.53 -1.47 16
22 H 0.06 1.12 5.90 -51.93 -0.31 0.82 16
23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
25 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16
26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
28 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16
29 H 0.11 1.13 7.90 -51.93 -0.41 0.71 16
30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
LS Contribution 303.24 15.07 4.57 4.57
Total: -1.00 -29.57 303.24 -8.98 -38.54
By element:
Atomic # 1 Polarization: 0.58 SS G_CDS: -4.05 Total: -3.47 kcal
Atomic # 6 Polarization: -18.37 SS G_CDS: -1.07 Total: -19.44 kcal
Atomic # 7 Polarization: -35.26 SS G_CDS: 1.39 Total: -33.87 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 16 Polarization: 2.22 SS G_CDS: -4.79 Total: -2.58 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -29.57 -8.98 -38.54 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188321693.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.854 kcal
(2) G-P(sol) polarization free energy of solvation -29.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.311 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds