Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47086 * 59.99787 * 9 7 5 11 11 H 1.48496 * 109.47228 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47059 * 300.00037 * 9 7 5 13 13 S 1.81003 * 109.47194 * 239.99934 * 2 1 3 14 14 C 1.76192 * 100.00037 * 64.99821 * 13 2 1 15 15 N 1.30311 * 126.16969 * 359.69734 * 14 13 2 16 16 N 1.26102 * 117.60187 * 179.75513 * 15 14 13 17 17 C 1.29317 * 117.97714 * 0.55463 * 16 15 14 18 18 C 1.50703 * 126.06490 * 179.72521 * 17 16 15 19 19 C 1.53000 * 117.49193 * 8.59697 * 18 17 16 20 20 C 1.52998 * 60.00047 * 252.50826 * 19 18 17 21 21 S 1.76488 * 107.88025 * 359.70411 * 17 16 15 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 26 26 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 27 27 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.08999 * 115.55167 * 154.30246 * 18 17 16 29 29 H 1.08998 * 117.50607 * 0.02562 * 19 18 17 30 30 H 1.09001 * 117.49343 * 145.02051 * 19 18 17 31 31 H 1.08995 * 117.50165 * 252.51124 * 20 19 18 32 32 H 1.09006 * 117.51487 * 107.48179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.4855 0.3692 2.4951 11 1 6.5870 -1.7604 3.6498 12 1 6.6837 -1.6886 1.2276 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2421 -2.7257 15 7 0.8638 1.3363 -2.5298 16 7 0.5262 2.0040 -3.5449 17 6 0.8672 1.5536 -4.7082 18 6 0.5562 2.1974 -6.0349 19 6 -0.0555 3.5996 -6.0133 20 6 -0.9173 2.3948 -6.3962 21 16 1.7618 0.0516 -4.4668 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6055 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2057 27 1 4.0606 -2.2423 4.0363 28 1 1.2459 1.9611 -6.8452 29 1 -0.2326 4.0567 -5.0398 30 1 0.2318 4.2862 -6.8097 31 1 -1.1971 2.2888 -7.4442 32 1 -1.6619 2.0586 -5.6745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188321693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = 55.980397 kcal Electronic energy + Delta-G solvation = -15535.216151 eV Core-core repulsion = 12942.042127 eV Total energy + Delta-G solvation = -2593.174024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.03269 -38.18634 -36.52745 -34.16186 -32.29671 -29.43471 -28.08276 -25.31327 -24.31384 -23.28149 -22.63725 -20.98749 -20.13758 -18.54922 -17.99748 -17.14458 -16.83118 -16.58328 -16.25438 -15.25727 -14.81624 -14.67976 -14.25514 -13.67501 -13.44246 -13.36391 -13.07231 -12.79007 -12.61578 -12.45911 -12.40585 -12.26780 -11.82620 -11.69930 -11.49378 -11.33863 -11.23394 -11.15292 -10.92871 -10.56105 -10.45354 -8.72351 -8.22436 -6.32371 -0.76993 -0.45082 0.13262 0.51834 1.18159 1.40215 1.40960 1.42803 1.50607 2.40207 2.85549 3.10211 3.12774 3.75135 3.87853 3.91615 4.01274 4.04383 4.13812 4.46824 4.52723 4.78771 4.84594 4.93719 4.94279 5.11219 5.16766 5.27085 5.35343 5.44897 5.73940 6.12990 6.79247 7.36395 7.47292 8.88880 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.004268 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.941222 B = 6559.001778 C = 6851.714879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 H 0.079 0.921 4 C 0.045 3.955 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.266 1.266 13 S 0.042 5.958 14 C -0.021 4.021 15 N -0.293 5.293 16 N -0.286 5.286 17 C 0.057 3.943 18 C -0.107 4.107 19 C -0.146 4.146 20 C -0.141 4.141 21 S 0.132 5.868 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.009 0.991 27 H 0.265 0.735 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 5.912 -21.254 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.188 4.188 3 H 0.097 0.903 4 C 0.006 3.994 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.191 1.191 13 S 0.274 5.726 14 C -0.407 4.407 15 N -0.135 5.135 16 N -0.121 5.121 17 C -0.227 4.227 18 C -0.129 4.129 19 C -0.185 4.185 20 C -0.180 4.180 21 S 0.374 5.626 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.176 0.824 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.738 4.926 -20.899 22.226 hybrid contribution 0.327 0.932 1.002 1.407 sum -5.412 5.858 -19.898 21.436 Atomic orbital electron populations 1.22007 0.92120 1.02542 1.02902 1.23472 0.99206 1.01425 0.94688 0.90259 1.18890 0.95605 0.94672 0.90191 1.21542 0.92717 1.34862 1.08681 0.91911 1.25820 1.03330 0.94635 0.95107 1.70057 1.37682 1.36440 1.12573 0.85620 0.79827 0.78611 0.77816 1.19492 1.20747 1.19072 1.86091 1.65771 1.26176 0.94590 1.31879 1.04004 1.02383 1.02467 1.71732 1.14430 1.04137 1.23178 1.70654 1.20435 1.25935 0.95055 1.29501 0.99345 0.95091 0.98782 1.20751 1.00428 1.01841 0.89896 1.23139 1.01507 0.89711 1.04188 1.23189 0.89841 1.00868 1.04095 1.85327 1.54045 1.24487 0.98767 0.91605 0.91194 0.91823 0.96216 0.97260 0.92608 0.82377 0.89584 0.84868 0.84411 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.01 71.98 0.65 -4.40 16 2 C -0.06 -2.45 2.28 30.60 0.07 -2.38 16 3 H 0.08 3.56 8.14 -2.40 -0.02 3.54 16 4 C 0.05 2.31 4.44 29.85 0.13 2.44 16 5 C -0.54 -29.86 8.53 25.60 0.22 -29.64 16 6 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 7 C 0.01 0.55 5.46 84.65 0.46 1.02 16 8 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 S 0.04 1.62 21.07 -56.49 -1.19 0.43 16 14 C -0.02 -0.72 7.55 130.47 0.99 0.26 16 15 N -0.29 -10.87 9.07 -54.83 -0.50 -11.37 16 16 N -0.29 -9.40 11.13 -47.71 -0.53 -9.93 16 17 C 0.06 1.46 7.32 88.48 0.65 2.11 16 18 C -0.11 -1.71 6.33 -11.54 -0.07 -1.78 16 19 C -0.15 -2.05 10.14 30.59 0.31 -1.74 16 20 C -0.14 -1.79 10.23 30.59 0.31 -1.47 16 21 S 0.13 3.45 23.54 -56.49 -1.33 2.12 16 22 H 0.07 2.39 5.90 -2.39 -0.01 2.38 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 1.65 7.90 -2.39 -0.02 1.63 16 30 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -65.00 303.24 3.60 -61.40 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.12 Total: 1.81 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 3.71 Total: -35.60 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -0.74 Total: -76.05 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -2.52 Total: 2.56 kcal Total: -65.00 3.60 -61.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188321693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.378 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds