Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 S 1.80999 * 109.47528 * 120.00137 * 2 1 3 14 14 C 1.76199 * 99.99903 * 295.00292 * 13 2 1 15 15 N 1.30310 * 126.17091 * 0.02562 * 14 13 2 16 16 N 1.26101 * 117.60326 * 179.97438 * 15 14 13 17 17 C 1.29322 * 117.97599 * 0.02562 * 16 15 14 18 18 C 1.50699 * 126.05867 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.49923 * 8.78145 * 18 17 16 20 20 C 1.53000 * 117.50328 * 300.11718 * 18 17 16 21 21 S 1.76485 * 107.87949 * 359.75770 * 17 16 15 22 22 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 24 24 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 25 25 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 26 26 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 27 27 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 28 28 H 1.09003 * 115.54499 * 154.44255 * 18 17 16 29 29 H 1.08997 * 117.49741 * 359.97438 * 19 18 17 30 30 H 1.08997 * 117.50174 * 145.01697 * 19 18 17 31 31 H 1.09002 * 117.49648 * 214.97888 * 20 18 17 32 32 H 1.09000 * 117.49700 * 359.97411 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.7049 -2.2018 -1.7365 11 1 6.5248 -1.0524 -3.8642 12 1 6.5224 0.2156 -1.7971 13 16 2.1334 -0.8533 1.4778 14 6 1.5439 0.2422 2.7257 15 7 0.8681 1.3389 2.5296 16 7 0.5253 2.0034 3.5450 17 6 0.8669 1.5533 4.7083 18 6 0.5557 2.1970 6.0349 19 6 -0.4071 3.3860 6.0346 20 6 1.0877 3.6111 6.2762 21 16 1.7566 0.0484 4.4671 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.6052 -0.2616 -2.1370 26 1 1.7516 -1.7714 -1.2057 27 1 4.0598 -2.2352 -4.0406 28 1 0.5195 1.5203 6.8887 29 1 -0.8151 3.7030 5.0748 30 1 -1.0763 3.4920 6.8884 31 1 1.4011 3.8648 7.2888 32 1 1.6631 4.0757 5.4755 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188321716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = 55.897512 kcal Electronic energy + Delta-G solvation = -15536.979682 eV Core-core repulsion = 12943.802064 eV Total energy + Delta-G solvation = -2593.177618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.03270 -38.18262 -36.52807 -34.16206 -32.29596 -29.43609 -28.08274 -25.31482 -24.31356 -23.28686 -22.63798 -20.98750 -20.13556 -18.55291 -17.98768 -17.23358 -16.62911 -16.62424 -16.34648 -15.25538 -14.80078 -14.68654 -14.25546 -13.67442 -13.46083 -13.36799 -13.06946 -12.75615 -12.61420 -12.44290 -12.40261 -12.33747 -11.81141 -11.71444 -11.46866 -11.35635 -11.23852 -11.11886 -10.93571 -10.56637 -10.45700 -8.72282 -8.22632 -6.32481 -0.76991 -0.45148 0.13215 0.51846 1.18150 1.40147 1.40896 1.40974 1.52053 2.40004 2.85612 3.09948 3.12634 3.75321 3.87679 3.91614 4.01262 4.03765 4.13848 4.46853 4.52611 4.78588 4.84652 4.93753 4.94225 5.11006 5.16842 5.26963 5.35416 5.44856 5.74018 6.12938 6.79369 7.36367 7.47299 8.88878 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.004321 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.498353 B = 6478.210931 C = 6769.124498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 H 0.079 0.921 4 C 0.045 3.955 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.267 1.267 13 S 0.042 5.958 14 C -0.021 4.021 15 N -0.293 5.293 16 N -0.286 5.286 17 C 0.056 3.944 18 C -0.105 4.105 19 C -0.144 4.144 20 C -0.144 4.144 21 S 0.132 5.868 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.020 0.980 26 H 0.009 0.991 27 H 0.265 0.735 28 H 0.160 0.840 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 6.307 21.218 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.188 4.188 3 H 0.097 0.903 4 C 0.006 3.994 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.191 1.191 13 S 0.274 5.726 14 C -0.407 4.407 15 N -0.135 5.135 16 N -0.121 5.121 17 C -0.228 4.228 18 C -0.128 4.128 19 C -0.183 4.183 20 C -0.184 4.184 21 S 0.374 5.626 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.177 0.823 29 H 0.105 0.895 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.102 5.317 20.865 22.128 hybrid contribution 0.290 0.902 -1.007 1.383 sum -4.812 6.219 19.858 21.358 Atomic orbital electron populations 1.22005 0.92116 1.02550 1.02897 1.23471 0.99207 1.01420 0.94700 0.90279 1.18895 0.95616 0.94679 0.90194 1.21566 0.92719 1.34899 1.08509 0.91927 1.25817 1.03305 0.94666 0.95109 1.70060 1.37604 1.36552 1.12533 0.85561 0.79894 0.78977 0.77395 1.19622 1.20715 1.19094 1.86083 1.65769 1.26172 0.94578 1.31881 1.04069 1.02315 1.02477 1.71730 1.14421 1.04161 1.23177 1.70656 1.20133 1.26218 0.95069 1.29505 0.99118 0.95328 0.98805 1.20754 1.09709 0.92489 0.89831 1.23152 0.93306 0.97304 1.04562 1.23200 0.97078 0.93534 1.04549 1.85321 1.54048 1.24457 0.98753 0.91812 0.91620 0.91190 0.96200 0.97254 0.92613 0.82256 0.89548 0.84733 0.84431 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.01 71.98 0.65 -4.41 16 2 C -0.06 -2.46 2.28 30.59 0.07 -2.39 16 3 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 4 C 0.04 2.29 4.44 29.85 0.13 2.43 16 5 C -0.54 -29.79 8.53 25.60 0.22 -29.57 16 6 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 7 C 0.01 0.55 5.46 84.65 0.46 1.01 16 8 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 9 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 S 0.04 1.63 21.07 -56.49 -1.19 0.44 16 14 C -0.02 -0.73 7.55 130.47 0.98 0.26 16 15 N -0.29 -10.88 9.08 -54.83 -0.50 -11.38 16 16 N -0.29 -9.40 11.13 -47.71 -0.53 -9.93 16 17 C 0.06 1.45 7.32 88.48 0.65 2.10 16 18 C -0.11 -1.69 6.33 -11.54 -0.07 -1.76 16 19 C -0.14 -2.00 10.14 30.62 0.31 -1.69 16 20 C -0.14 -1.92 10.24 30.62 0.31 -1.60 16 21 S 0.13 3.46 23.54 -56.49 -1.33 2.13 16 22 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.06 2.39 5.91 -2.38 -0.01 2.38 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.64 7.90 -2.39 -0.02 1.62 16 30 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.03 303.26 3.60 -61.43 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.12 Total: 1.71 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.72 Total: -35.62 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -0.74 Total: -76.00 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -2.52 Total: 2.57 kcal Total: -65.03 3.60 -61.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188321716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.327 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds