Wall clock time and date at job start Mon Mar 30 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47372 * 2 1 4 4 S 1.81397 * 109.47255 * 239.99197 * 2 1 3 5 5 C 1.81401 * 102.99785 * 65.00350 * 4 2 1 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 C 1.50704 * 109.46798 * 119.99332 * 2 1 3 16 16 C 1.38266 * 119.99017 * 240.00023 * 15 2 1 17 17 C 1.38220 * 120.02374 * 179.97438 * 16 15 2 18 18 C 1.38237 * 120.01457 * 0.02562 * 17 16 15 19 19 C 1.38337 * 119.98504 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 120.01215 * 180.02562 * 19 18 17 21 21 C 1.38196 * 119.99494 * 59.72545 * 15 2 1 22 22 H 1.09004 * 109.47346 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47610 * 300.00872 * 1 2 3 24 24 H 1.09002 * 109.46704 * 60.00646 * 1 2 3 25 25 H 1.09002 * 109.47085 * 299.99903 * 5 4 2 26 26 H 1.09001 * 109.47417 * 60.00029 * 5 4 2 27 27 H 1.09002 * 109.47153 * 299.99990 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99620 * 6 5 4 29 29 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 30 30 H 1.07995 * 119.99190 * 359.97438 * 16 15 2 31 31 H 1.07994 * 119.99399 * 180.02562 * 17 16 15 32 32 H 1.08001 * 120.01135 * 180.02562 * 18 17 16 33 33 H 1.08005 * 120.00119 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8553 -1.4810 5 6 1.5665 0.2150 -2.8309 6 6 2.0051 -0.3782 -4.1712 7 6 1.5326 0.5106 -5.2927 8 1 0.9755 1.4090 -5.0716 9 6 1.8123 0.1774 -6.6010 10 7 2.4911 -0.9164 -6.8703 11 14 1.2260 1.2788 -7.9912 12 1 0.4894 2.4382 -7.4270 13 1 2.3966 1.7654 -8.7646 14 1 0.3264 0.5086 -8.8871 15 6 2.0322 -0.7103 1.2306 16 6 2.8271 -0.0381 2.1406 17 6 3.2877 -0.6887 3.2697 18 6 2.9543 -2.0121 3.4896 19 6 2.1600 -2.6855 2.5790 20 17 1.7403 -4.3472 2.8547 21 6 1.6936 -2.0317 1.4522 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.4793 0.2879 -2.8037 26 1 2.0002 1.2082 -2.7142 27 1 3.0924 -0.4507 -4.1981 28 1 1.5718 -1.3715 -4.2882 29 1 2.6883 -1.1506 -7.7907 30 1 3.0882 0.9957 1.9691 31 1 3.9082 -0.1631 3.9804 32 1 3.3139 -2.5203 4.3721 33 1 1.0694 -2.5554 0.7433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190921678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:57 Heat of formation + Delta-G solvation = -8.163183 kcal Electronic energy + Delta-G solvation = -15256.888251 eV Core-core repulsion = 12626.596295 eV Total energy + Delta-G solvation = -2630.291956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.60205 -36.64842 -34.26722 -33.69704 -30.96172 -30.85786 -29.52201 -25.24220 -24.31999 -22.76310 -21.62662 -20.75228 -17.23919 -16.52326 -16.17280 -15.78759 -15.06765 -14.51408 -14.10665 -13.98229 -13.92040 -13.80555 -13.30485 -12.89046 -12.38764 -12.12596 -11.86599 -11.59838 -11.47125 -11.40321 -11.21283 -11.04289 -10.89594 -10.55713 -10.19993 -9.68053 -9.54944 -9.08476 -8.95057 -8.75189 -8.43430 -7.18183 -6.07027 -4.11706 0.92982 1.08625 2.00013 2.20321 3.17281 3.27406 3.35165 3.38635 3.53580 4.40283 4.41994 4.61994 4.87781 4.98664 5.07964 5.18658 5.28621 5.29039 5.49926 5.60312 5.78044 5.79859 5.96617 6.06719 6.11860 6.14037 6.18125 6.37630 6.61518 6.72574 7.55735 7.64084 7.89270 8.26299 8.93542 9.52353 11.03767 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.003469 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.581376 B = 8069.366803 C = 8444.256542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 H 0.092 0.908 4 S -0.270 6.270 5 C -0.061 4.061 6 C 0.037 3.963 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.043 4.043 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.115 4.115 19 C -0.033 4.033 20 Cl -0.073 7.073 21 C -0.091 4.091 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -0.183 21.411 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 H 0.110 0.890 4 S -0.039 6.039 5 C -0.209 4.209 6 C -0.001 4.001 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.143 4.143 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.044 4.044 16 C -0.125 4.125 17 C -0.126 4.126 18 C -0.134 4.134 19 C -0.059 4.059 20 Cl -0.044 7.044 21 C -0.111 4.111 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.637 -1.379 21.202 21.256 hybrid contribution -0.913 1.511 -0.781 1.931 sum -1.550 0.132 20.421 20.480 Atomic orbital electron populations 1.22099 0.92522 1.03329 1.02298 1.22006 0.98788 1.01092 0.93613 0.88958 1.87149 1.76129 1.40169 1.00466 1.23734 1.02194 0.98931 0.96006 1.18905 0.97542 0.96689 0.87013 1.21127 1.35789 1.08518 0.90637 0.92422 1.25016 0.95062 0.95299 0.98892 1.69986 1.39294 1.24057 1.19527 0.86471 0.78539 0.80565 0.82044 1.19698 1.20892 1.20879 1.19306 0.97147 0.93437 0.94546 1.21153 0.96948 1.00401 0.93951 1.21047 0.99888 0.93972 0.97707 1.21036 0.98375 0.94895 0.99139 1.20880 1.01434 0.86195 0.97419 1.98370 1.92454 1.17442 1.96154 1.20986 0.99969 0.94125 0.95982 0.91270 0.92145 0.91528 0.91240 0.91444 0.95560 0.95530 0.92826 0.85317 0.85039 0.85112 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.91 37.16 0.33 -1.42 16 2 C -0.03 -0.36 3.01 -27.88 -0.08 -0.45 16 3 H 0.09 1.17 7.88 -51.92 -0.41 0.76 16 4 S -0.27 -4.90 20.77 -107.50 -2.23 -7.14 16 5 C -0.06 -1.25 5.57 37.16 0.21 -1.04 16 6 C 0.04 0.96 4.98 -27.89 -0.14 0.82 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 11 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.04 -0.54 4.78 -104.63 -0.50 -1.04 16 16 C -0.10 -1.11 9.67 -39.58 -0.38 -1.49 16 17 C -0.11 -1.00 10.05 -39.59 -0.40 -1.40 16 18 C -0.12 -1.15 9.83 -39.55 -0.39 -1.54 16 19 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 20 Cl -0.07 -0.82 28.96 -51.86 -1.50 -2.32 16 21 C -0.09 -1.16 8.57 -39.55 -0.34 -1.50 16 22 H 0.07 0.85 7.37 -51.93 -0.38 0.47 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.85 6.92 -51.93 -0.36 0.49 16 25 H 0.07 1.36 7.14 -51.92 -0.37 0.99 16 26 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.13 1.14 7.95 -52.49 -0.42 0.72 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.84 7.56 -52.48 -0.40 1.44 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -29.78 309.68 -10.12 -39.90 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.41 Total: -2.62 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.35 Total: -22.90 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -2.23 Total: -7.14 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.78 -10.12 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190921678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.735 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds