Wall clock time and date at job start Mon Mar 30 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47372 * 2 1 4 4 S 1.81397 * 109.47255 * 239.99197 * 2 1 3 5 5 C 1.81401 * 102.99785 * 65.00350 * 4 2 1 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 C 1.50704 * 109.46798 * 119.99332 * 2 1 3 16 16 C 1.38266 * 119.99017 * 240.00023 * 15 2 1 17 17 C 1.38220 * 120.02374 * 179.97438 * 16 15 2 18 18 C 1.38237 * 120.01457 * 0.02562 * 17 16 15 19 19 C 1.38337 * 119.98504 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 120.01215 * 180.02562 * 19 18 17 21 21 C 1.38196 * 119.99494 * 59.72545 * 15 2 1 22 22 H 1.09004 * 109.47346 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47610 * 300.00872 * 1 2 3 24 24 H 1.09002 * 109.46704 * 60.00646 * 1 2 3 25 25 H 1.09002 * 109.47085 * 299.99903 * 5 4 2 26 26 H 1.09001 * 109.47417 * 60.00029 * 5 4 2 27 27 H 1.09002 * 109.47153 * 299.99990 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99620 * 6 5 4 29 29 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 30 30 H 1.07995 * 119.99190 * 359.97438 * 16 15 2 31 31 H 1.07994 * 119.99399 * 180.02562 * 17 16 15 32 32 H 1.08001 * 120.01135 * 180.02562 * 18 17 16 33 33 H 1.08005 * 120.00119 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8553 -1.4810 5 6 1.5665 0.2150 -2.8309 6 6 2.0051 -0.3782 -4.1712 7 6 1.5326 0.5106 -5.2927 8 1 0.9755 1.4090 -5.0716 9 6 1.8123 0.1774 -6.6010 10 7 2.4911 -0.9164 -6.8703 11 14 1.2260 1.2788 -7.9912 12 1 0.4894 2.4382 -7.4270 13 1 2.3966 1.7654 -8.7646 14 1 0.3264 0.5086 -8.8871 15 6 2.0322 -0.7103 1.2306 16 6 2.8271 -0.0381 2.1406 17 6 3.2877 -0.6887 3.2697 18 6 2.9543 -2.0121 3.4896 19 6 2.1600 -2.6855 2.5790 20 17 1.7403 -4.3472 2.8547 21 6 1.6936 -2.0317 1.4522 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.4793 0.2879 -2.8037 26 1 2.0002 1.2082 -2.7142 27 1 3.0924 -0.4507 -4.1981 28 1 1.5718 -1.3715 -4.2882 29 1 2.6883 -1.1506 -7.7907 30 1 3.0882 0.9957 1.9691 31 1 3.9082 -0.1631 3.9804 32 1 3.3139 -2.5203 4.3721 33 1 1.0694 -2.5554 0.7433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190921678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:57 Heat of formation + Delta-G solvation = -22.226768 kcal Electronic energy + Delta-G solvation = -15257.498094 eV Core-core repulsion = 12626.596295 eV Total energy + Delta-G solvation = -2630.901799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45312 -37.51874 -35.78868 -35.20355 -32.92957 -31.72130 -30.46375 -27.28794 -25.26943 -23.60916 -23.33166 -21.95543 -18.67829 -18.13930 -17.30394 -16.68976 -16.50179 -16.09728 -15.60735 -15.27820 -15.00439 -14.71727 -14.48087 -14.11621 -13.85517 -13.65931 -13.08351 -12.92457 -12.78794 -12.60113 -12.35791 -12.32278 -12.23321 -12.09186 -11.80708 -11.65802 -11.19932 -10.72749 -10.61824 -9.86086 -9.64831 -8.65067 -8.23420 -6.37143 0.01241 0.23708 0.94522 1.14154 1.41199 1.41452 1.54971 1.74255 2.40302 2.68799 3.09989 3.46076 3.77738 4.02086 4.09886 4.22032 4.25998 4.29633 4.38745 4.45718 4.65509 4.71640 4.80816 4.89766 4.95385 5.16631 5.24017 5.34714 5.38193 5.49092 5.49996 5.73661 5.81677 6.10657 6.77655 7.32619 8.88587 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.003469 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.581376 B = 8069.366803 C = 8444.256542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 H 0.107 0.893 4 S -0.309 6.309 5 C -0.048 4.048 6 C 0.044 3.956 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.001 3.999 10 N -0.933 5.933 11 Si 0.972 3.028 12 H -0.258 1.258 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.061 4.061 16 C -0.104 4.104 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.047 4.047 20 Cl -0.076 7.076 21 C -0.106 4.106 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.076 0.924 27 H -0.006 1.006 28 H -0.006 1.006 29 H 0.265 0.735 30 H 0.150 0.850 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 1.701 23.182 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.125 0.875 4 S -0.079 6.079 5 C -0.196 4.196 6 C 0.006 3.994 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.796 3.204 12 H -0.181 1.181 13 H -0.203 1.203 14 H -0.204 1.204 15 C -0.063 4.063 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.131 4.131 19 C -0.073 4.073 20 Cl -0.047 7.047 21 C -0.127 4.127 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.013 0.987 28 H 0.013 0.987 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.810 0.511 22.975 22.995 hybrid contribution -0.821 0.870 -1.165 1.670 sum -1.631 1.380 21.810 21.915 Atomic orbital electron populations 1.22074 0.91557 1.03232 1.03130 1.22056 0.99491 1.01015 0.90927 0.87499 1.87231 1.76785 1.41142 1.02718 1.23332 1.02596 0.99132 0.94497 1.18677 0.95199 0.95334 0.90238 1.21579 1.35772 1.09042 0.91598 0.91372 1.26037 0.94992 0.96759 1.01982 1.70131 1.40657 1.26099 1.20333 0.85291 0.78151 0.78736 0.78213 1.18147 1.20343 1.20380 1.19283 0.98756 0.93544 0.94710 1.21455 0.95772 1.01406 0.93748 1.21456 0.99159 0.93597 0.97594 1.21393 0.97144 0.95324 0.99199 1.21030 1.02227 0.86302 0.97750 1.98365 1.92564 1.17666 1.96115 1.20944 1.00660 0.94605 0.96447 0.91936 0.89542 0.92236 0.90389 0.90580 0.98720 0.98731 0.92605 0.83240 0.81555 0.82885 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.91 71.98 0.64 -2.62 16 2 C -0.01 -0.18 3.01 29.85 0.09 -0.09 16 3 H 0.11 2.46 7.88 -2.39 -0.02 2.44 16 4 S -0.31 -11.44 20.77 -56.49 -1.17 -12.61 16 5 C -0.05 -1.99 5.57 71.98 0.40 -1.59 16 6 C 0.04 2.37 4.98 29.85 0.15 2.52 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 11 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 C -0.06 -1.44 4.78 -19.87 -0.09 -1.53 16 16 C -0.10 -1.88 9.67 22.27 0.22 -1.67 16 17 C -0.10 -1.48 10.05 22.27 0.22 -1.26 16 18 C -0.11 -1.91 9.83 22.29 0.22 -1.69 16 19 C -0.05 -1.03 6.32 22.32 0.14 -0.89 16 20 Cl -0.08 -1.65 28.96 -2.72 -0.08 -1.73 16 21 C -0.11 -2.67 8.57 22.29 0.19 -2.47 16 22 H 0.06 1.52 7.37 -2.39 -0.02 1.51 16 23 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.45 6.92 -2.39 -0.02 1.44 16 25 H 0.08 3.07 7.14 -2.39 -0.02 3.05 16 26 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 27 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.15 2.05 7.95 -2.91 -0.02 2.02 16 31 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.12 3.38 7.56 -2.91 -0.02 3.36 16 Total: -1.00 -66.09 309.68 5.02 -61.07 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.09 Total: 5.59 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 2.87 Total: -41.14 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -1.17 Total: -12.61 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -66.09 5.02 -61.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190921678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.844 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds