Wall clock time and date at job start Mon Mar 30 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46581 * 2 1 4 4 S 1.81391 * 109.47124 * 119.99768 * 2 1 3 5 5 C 1.81402 * 103.00321 * 295.00160 * 4 2 1 6 6 C 1.52998 * 109.47298 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47326 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99893 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00227 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00066 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99824 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47022 * 90.00475 * 11 9 7 13 13 H 1.48508 * 109.46899 * 210.00131 * 11 9 7 14 14 H 1.48500 * 109.47422 * 330.00063 * 11 9 7 15 15 C 1.50694 * 109.47151 * 240.00259 * 2 1 3 16 16 C 1.38265 * 119.99277 * 300.01525 * 15 2 1 17 17 C 1.38216 * 120.02667 * 180.02562 * 16 15 2 18 18 C 1.38234 * 120.01494 * 359.96105 * 17 16 15 19 19 C 1.38328 * 119.98526 * 359.76620 * 18 17 16 20 20 Cl 1.73604 * 120.01692 * 180.27839 * 19 18 17 21 21 C 1.38195 * 119.99579 * 120.00131 * 15 2 1 22 22 H 1.09005 * 109.46581 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47292 * 299.99530 * 1 2 3 24 24 H 1.08995 * 109.47303 * 60.00469 * 1 2 3 25 25 H 1.08996 * 109.47031 * 300.00240 * 5 4 2 26 26 H 1.09001 * 109.46625 * 60.00291 * 5 4 2 27 27 H 1.09005 * 109.47191 * 300.00228 * 6 5 4 28 28 H 1.08999 * 109.47174 * 60.00018 * 6 5 4 29 29 H 0.96995 * 120.00160 * 180.02562 * 10 9 7 30 30 H 1.08007 * 119.98705 * 359.97438 * 16 15 2 31 31 H 1.08001 * 119.99346 * 179.97438 * 17 16 15 32 32 H 1.08007 * 120.00805 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.00237 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8550 1.4811 5 6 1.5664 0.2154 2.8309 6 6 2.0039 -0.3784 4.1714 7 6 1.5313 0.5105 5.2928 8 1 0.9749 1.4094 5.0715 9 6 1.8101 0.1770 6.6012 10 7 1.3981 0.9530 7.5798 11 14 2.7730 -1.3773 6.9839 12 1 4.2245 -1.0652 7.0151 13 1 2.3522 -1.9074 8.3058 14 1 2.5079 -2.3948 5.9353 15 6 2.0323 -0.7103 -1.2304 16 6 1.6980 -2.0340 -1.4493 17 6 2.1588 -2.6863 -2.5774 18 6 2.9536 -2.0154 -3.4879 19 6 3.2838 -0.6896 -3.2723 20 17 4.2760 0.1558 -4.4190 21 6 2.8269 -0.0386 -2.1400 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 2.0001 1.2085 2.7141 26 1 0.4792 0.2881 2.8037 27 1 1.5699 -1.3715 4.2879 28 1 3.0911 -0.4516 4.1988 29 1 1.5945 0.7185 8.5002 30 1 1.0771 -2.5586 -0.7381 31 1 1.8976 -3.7203 -2.7476 32 1 3.3132 -2.5252 -4.3696 33 1 3.0881 0.9953 -1.9688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190921696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:59 Heat of formation + Delta-G solvation = -4.767273 kcal Electronic energy + Delta-G solvation = -15263.041309 eV Core-core repulsion = 12632.896611 eV Total energy + Delta-G solvation = -2630.144698 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.66472 -36.75642 -34.30993 -33.73728 -31.28933 -31.02415 -29.56077 -25.53836 -24.34647 -22.89878 -21.48885 -20.59067 -17.31873 -16.97149 -16.24183 -15.81006 -15.14063 -14.46129 -14.39943 -14.05167 -13.92325 -13.74631 -13.33204 -12.94356 -12.74911 -12.21109 -11.99066 -11.73287 -11.59112 -11.52509 -11.38761 -11.16004 -10.97027 -10.32468 -10.07123 -9.92667 -9.56550 -9.20660 -9.06970 -8.80334 -8.61458 -7.31965 -6.12363 -4.12518 0.88198 1.00301 1.87504 2.12256 3.02804 3.28768 3.36089 3.41141 3.47795 4.34353 4.39809 4.57286 4.82819 4.90643 5.06085 5.11624 5.21631 5.21835 5.46249 5.57974 5.67491 5.74295 5.85401 5.96773 5.97620 6.05217 6.15714 6.31603 6.52332 6.56933 7.08810 7.20992 7.64047 8.40976 8.89147 9.48372 11.00391 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034337 B = 0.003457 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.262710 B = 8098.418228 C = 8108.695728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 H 0.093 0.907 4 S -0.277 6.277 5 C -0.053 4.053 6 C 0.003 3.997 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.878 3.122 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.263 1.263 15 C -0.044 4.044 16 C -0.095 4.095 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.034 4.034 20 Cl -0.075 7.075 21 C -0.099 4.099 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -4.868 -23.308 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 H 0.111 0.889 4 S -0.046 6.046 5 C -0.201 4.201 6 C -0.036 4.036 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.131 4.131 10 N -0.538 5.538 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.188 1.188 15 C -0.045 4.045 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.061 4.061 20 Cl -0.046 7.046 21 C -0.120 4.120 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.753 -5.706 -23.122 23.880 hybrid contribution -0.015 0.533 0.211 0.573 sum 1.738 -5.173 -22.911 23.551 Atomic orbital electron populations 1.22099 0.92291 1.03356 1.02499 1.21980 0.98874 1.01116 0.93145 0.88900 1.86979 1.76362 1.40339 1.00928 1.23525 1.02750 0.99059 0.94747 1.19360 0.96911 0.97178 0.90124 1.20959 1.36459 1.09350 0.89322 0.90831 1.24961 0.95289 0.96707 0.96138 1.69894 1.46334 1.37947 0.99606 0.86787 0.80640 0.84125 0.77915 1.20075 1.21186 1.18789 1.19288 0.96890 0.94256 0.94107 1.21219 0.99211 0.93856 0.97150 1.21107 0.97342 1.00151 0.93887 1.21048 0.99134 0.92617 1.00494 1.20835 0.98689 0.93525 0.93011 1.98368 1.68731 1.77857 1.59640 1.20922 0.97661 1.00649 0.92733 0.91219 0.91412 0.92004 0.90806 0.90598 0.95587 0.96053 0.92514 0.84699 0.84933 0.85075 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.91 37.16 0.33 -1.31 16 2 C -0.02 -0.29 3.01 -27.88 -0.08 -0.38 16 3 H 0.09 1.16 7.88 -51.92 -0.41 0.75 16 4 S -0.28 -4.67 20.76 -107.50 -2.23 -6.90 16 5 C -0.05 -1.04 5.58 37.16 0.21 -0.83 16 6 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 11 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 15 C -0.04 -0.52 4.78 -104.63 -0.50 -1.02 16 16 C -0.10 -1.04 8.78 -39.58 -0.35 -1.39 16 17 C -0.11 -1.00 10.05 -39.59 -0.40 -1.39 16 18 C -0.11 -1.08 9.83 -39.55 -0.39 -1.46 16 19 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 20 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 21 C -0.10 -1.12 9.46 -39.55 -0.37 -1.49 16 22 H 0.07 0.77 7.39 -51.93 -0.38 0.39 16 23 H 0.07 0.83 6.92 -51.93 -0.36 0.47 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.43 7.14 -51.92 -0.37 1.06 16 27 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 28 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.14 1.44 7.58 -52.48 -0.40 1.04 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.13 1.36 7.95 -52.49 -0.42 0.95 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -29.86 306.10 -9.74 -39.60 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.38 Total: -2.52 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.35 Total: -22.92 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.23 Total: -6.90 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.86 -9.74 -39.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190921696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.837 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds