Wall clock time and date at job start Mon Mar 30 2020 01:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46581 * 2 1 4 4 S 1.81391 * 109.47124 * 119.99768 * 2 1 3 5 5 C 1.81402 * 103.00321 * 295.00160 * 4 2 1 6 6 C 1.52998 * 109.47298 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47326 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99893 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00227 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00066 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99824 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47022 * 90.00475 * 11 9 7 13 13 H 1.48508 * 109.46899 * 210.00131 * 11 9 7 14 14 H 1.48500 * 109.47422 * 330.00063 * 11 9 7 15 15 C 1.50694 * 109.47151 * 240.00259 * 2 1 3 16 16 C 1.38265 * 119.99277 * 300.01525 * 15 2 1 17 17 C 1.38216 * 120.02667 * 180.02562 * 16 15 2 18 18 C 1.38234 * 120.01494 * 359.96105 * 17 16 15 19 19 C 1.38328 * 119.98526 * 359.76620 * 18 17 16 20 20 Cl 1.73604 * 120.01692 * 180.27839 * 19 18 17 21 21 C 1.38195 * 119.99579 * 120.00131 * 15 2 1 22 22 H 1.09005 * 109.46581 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47292 * 299.99530 * 1 2 3 24 24 H 1.08995 * 109.47303 * 60.00469 * 1 2 3 25 25 H 1.08996 * 109.47031 * 300.00240 * 5 4 2 26 26 H 1.09001 * 109.46625 * 60.00291 * 5 4 2 27 27 H 1.09005 * 109.47191 * 300.00228 * 6 5 4 28 28 H 1.08999 * 109.47174 * 60.00018 * 6 5 4 29 29 H 0.96995 * 120.00160 * 180.02562 * 10 9 7 30 30 H 1.08007 * 119.98705 * 359.97438 * 16 15 2 31 31 H 1.08001 * 119.99346 * 179.97438 * 17 16 15 32 32 H 1.08007 * 120.00805 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.00237 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8550 1.4811 5 6 1.5664 0.2154 2.8309 6 6 2.0039 -0.3784 4.1714 7 6 1.5313 0.5105 5.2928 8 1 0.9749 1.4094 5.0715 9 6 1.8101 0.1770 6.6012 10 7 1.3981 0.9530 7.5798 11 14 2.7730 -1.3773 6.9839 12 1 4.2245 -1.0652 7.0151 13 1 2.3522 -1.9074 8.3058 14 1 2.5079 -2.3948 5.9353 15 6 2.0323 -0.7103 -1.2304 16 6 1.6980 -2.0340 -1.4493 17 6 2.1588 -2.6863 -2.5774 18 6 2.9536 -2.0154 -3.4879 19 6 3.2838 -0.6896 -3.2723 20 17 4.2760 0.1558 -4.4190 21 6 2.8269 -0.0386 -2.1400 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 2.0001 1.2085 2.7141 26 1 0.4792 0.2881 2.8037 27 1 1.5699 -1.3715 4.2879 28 1 3.0911 -0.4516 4.1988 29 1 1.5945 0.7185 8.5002 30 1 1.0771 -2.5586 -0.7381 31 1 1.8976 -3.7203 -2.7476 32 1 3.3132 -2.5252 -4.3696 33 1 3.0881 0.9953 -1.9688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190921696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:58 Heat of formation + Delta-G solvation = -19.136057 kcal Electronic energy + Delta-G solvation = -15263.664386 eV Core-core repulsion = 12632.896611 eV Total energy + Delta-G solvation = -2630.767775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46855 -37.53743 -35.77360 -35.19227 -33.30046 -31.80906 -30.43985 -27.50269 -25.24378 -23.69143 -22.98657 -21.90049 -19.14491 -18.13626 -17.26781 -16.66613 -16.44330 -16.11915 -15.71020 -15.26919 -15.07901 -14.80134 -14.50891 -14.38867 -13.91997 -13.71550 -13.20284 -12.97796 -12.85288 -12.53793 -12.38927 -12.29063 -12.11378 -11.94411 -11.80501 -11.67546 -11.39093 -10.81559 -10.77773 -9.89349 -9.64573 -8.66106 -8.33948 -6.39439 0.00558 0.20168 0.89570 1.14493 1.35184 1.36367 1.48730 1.66605 2.33106 2.67127 3.01332 3.43877 3.76999 3.97862 4.13899 4.17554 4.21164 4.25840 4.27854 4.44172 4.63506 4.72450 4.79892 4.84598 4.91607 5.13353 5.19567 5.22634 5.30834 5.36521 5.48932 5.53203 5.79483 6.18698 6.66428 7.25308 8.82160 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034337 B = 0.003457 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.262710 B = 8098.418228 C = 8108.695728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.010 4.010 3 H 0.096 0.904 4 S -0.288 6.288 5 C -0.050 4.050 6 C 0.009 3.991 7 C -0.531 4.531 8 H 0.039 0.961 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.946 3.054 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.250 1.250 15 C -0.059 4.059 16 C -0.104 4.104 17 C -0.102 4.102 18 C -0.110 4.110 19 C -0.044 4.044 20 Cl -0.071 7.071 21 C -0.107 4.107 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.020 0.980 29 H 0.269 0.731 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -6.691 -25.381 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 H 0.114 0.886 4 S -0.057 6.057 5 C -0.198 4.198 6 C -0.030 4.030 7 C -0.571 4.571 8 H 0.058 0.942 9 C -0.186 4.186 10 N -0.585 5.585 11 Si 0.769 3.231 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.174 1.174 15 C -0.061 4.061 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.070 4.070 20 Cl -0.043 7.043 21 C -0.128 4.128 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.387 -7.523 -25.202 26.409 hybrid contribution -0.240 1.154 0.700 1.371 sum 2.147 -6.369 -24.502 25.407 Atomic orbital electron populations 1.22076 0.91200 1.03785 1.02884 1.22027 0.99702 1.00800 0.91275 0.88586 1.86874 1.76732 1.40181 1.01897 1.23202 1.02851 0.99288 0.94470 1.19197 0.96521 0.96246 0.91032 1.21286 1.35778 1.08923 0.91090 0.94222 1.25900 0.96434 1.00266 0.95986 1.70033 1.48099 1.40184 1.00213 0.85718 0.79245 0.79991 0.78138 1.19151 1.20484 1.17388 1.19215 0.98122 0.94868 0.93865 1.21358 0.99438 0.93612 0.97906 1.21417 0.96401 1.01323 0.92897 1.21371 0.98308 0.92167 1.01066 1.20976 0.98917 0.94137 0.93004 1.98370 1.68610 1.77906 1.59379 1.21005 0.97655 1.01031 0.93072 0.90808 0.92527 0.89988 0.91107 0.90455 0.95703 0.96160 0.92226 0.84650 0.82196 0.82896 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.91 71.98 0.64 -2.38 16 2 C -0.01 -0.24 3.01 29.85 0.09 -0.15 16 3 H 0.10 2.28 7.88 -2.39 -0.02 2.26 16 4 S -0.29 -9.40 20.76 -56.49 -1.17 -10.57 16 5 C -0.05 -1.96 5.58 71.98 0.40 -1.56 16 6 C 0.01 0.41 4.05 29.85 0.12 0.53 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 8 H 0.04 2.47 7.99 -2.91 -0.02 2.44 16 9 C 0.01 0.70 5.47 84.65 0.46 1.17 16 10 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 11 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.25 -11.15 6.54 99.48 0.65 -10.49 16 15 C -0.06 -1.30 4.78 -19.87 -0.09 -1.39 16 16 C -0.10 -2.04 8.78 22.27 0.20 -1.84 16 17 C -0.10 -1.59 10.05 22.26 0.22 -1.37 16 18 C -0.11 -1.75 9.83 22.29 0.22 -1.53 16 19 C -0.04 -0.83 6.32 22.32 0.14 -0.69 16 20 Cl -0.07 -1.28 28.96 -2.72 -0.08 -1.36 16 21 C -0.11 -2.23 9.46 22.29 0.21 -2.02 16 22 H 0.07 1.52 7.39 -2.38 -0.02 1.50 16 23 H 0.06 1.34 6.92 -2.39 -0.02 1.32 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.08 2.95 7.14 -2.39 -0.02 2.93 16 27 H 0.02 1.18 7.20 -2.38 -0.02 1.16 16 28 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.14 2.61 7.58 -2.91 -0.02 2.59 16 31 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 32 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.14 2.63 7.95 -2.91 -0.02 2.60 16 Total: -1.00 -64.36 306.10 4.83 -59.53 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.03 Total: 6.01 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 2.86 Total: -41.46 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.30 Total: -58.51 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.17 Total: -10.57 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -64.36 4.83 -59.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190921696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.395 kcal (2) G-P(sol) polarization free energy of solvation -64.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds