Wall clock time and date at job start Mon Mar 30 2020 00:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00251 * 2 1 4 4 C 1.50690 * 109.47373 * 270.00571 * 3 2 1 5 5 H 1.08002 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00188 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00174 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99990 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47394 * 90.00049 * 8 6 4 10 10 H 1.48505 * 109.47141 * 210.00520 * 8 6 4 11 11 H 1.48508 * 109.46901 * 330.00059 * 8 6 4 12 12 C 1.34778 * 119.99829 * 180.02562 * 2 1 3 13 13 O 1.21631 * 119.99939 * 184.28291 * 12 2 1 14 14 C 1.47190 * 119.99885 * 4.27770 * 12 2 1 15 15 C 1.36012 * 123.45785 * 145.83234 * 14 12 2 16 16 S 1.70448 * 110.81635 * 179.69615 * 15 14 12 17 17 C 1.75507 * 92.44464 * 0.26538 * 16 15 14 18 18 N 1.48025 * 124.71248 * 179.97438 * 17 16 15 19 19 O 1.21806 * 120.00353 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00312 * 0.02562 * 18 17 16 21 21 C 1.32771 * 110.57525 * 359.97438 * 17 16 15 22 22 H 1.09006 * 109.47507 * 264.16164 * 1 2 3 23 23 H 1.09000 * 109.47471 * 24.15676 * 1 2 3 24 24 H 1.08995 * 109.47719 * 144.16209 * 1 2 3 25 25 H 1.09002 * 109.46793 * 30.00422 * 3 2 1 26 26 H 1.08999 * 109.47204 * 149.99950 * 3 2 1 27 27 H 0.97007 * 119.99794 * 180.02562 * 7 6 4 28 28 H 1.08001 * 124.59022 * 359.95773 * 15 14 12 29 29 H 1.08001 * 123.45882 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2416 6 6 3.1268 2.8775 -1.6726 7 7 3.3455 3.2575 -2.9126 8 14 3.7340 3.9286 -0.2527 9 1 5.1070 3.5067 0.1238 10 1 3.7498 5.3554 -0.6645 11 1 2.8274 3.7595 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3526 -1.1688 0.0781 14 6 1.4059 -2.4401 -0.0962 15 6 1.8856 -3.5346 -0.7456 16 16 0.7806 -4.8289 -0.6491 17 6 -0.3652 -3.8797 0.2818 18 7 -1.6714 -4.3766 0.7698 19 8 -2.4021 -3.6417 1.4099 20 8 -2.0157 -5.5204 0.5314 21 6 0.1023 -2.6542 0.4874 22 1 -0.3634 -0.1045 1.0224 23 1 -0.3634 0.9377 -0.4205 24 1 -0.3634 -0.8330 -0.6016 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5138 27 1 3.8231 4.0830 -3.0897 28 1 2.8394 -3.5791 -1.2502 29 1 -0.4357 -1.8962 1.0373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193376628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:00 Heat of formation + Delta-G solvation = 12.212128 kcal Electronic energy + Delta-G solvation = -17950.508951 eV Core-core repulsion = 14776.851027 eV Total energy + Delta-G solvation = -3173.657924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.26375 -39.93227 -37.31782 -36.69147 -35.28218 -32.65714 -31.27057 -28.99782 -26.85259 -26.32162 -24.87188 -22.38467 -21.16730 -20.06274 -18.65724 -18.57398 -17.81374 -17.18805 -16.99355 -16.35026 -15.58845 -14.78431 -14.49665 -13.99978 -13.70795 -13.35980 -13.06388 -12.60004 -12.48146 -12.08398 -11.84745 -11.80874 -11.58230 -11.42749 -11.38629 -11.09296 -10.63306 -10.29005 -9.94101 -9.73327 -9.50847 -9.00070 -8.70424 -7.97510 -6.20318 -4.21027 -0.51937 0.25612 0.78821 1.04518 1.40520 1.61792 3.21035 3.23414 3.27810 3.29453 3.61990 4.27900 4.29369 4.40709 4.75810 4.89485 5.12701 5.27540 5.37965 5.42699 5.58028 5.96008 6.00035 6.50809 6.76530 7.05133 7.36272 7.45530 7.91003 8.30684 8.58415 8.81531 9.38551 10.92672 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.004640 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.775053 B = 6033.567782 C = 6417.834841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.584 5.584 3 C 0.215 3.785 4 C -0.536 4.536 5 H 0.075 0.925 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.570 3.430 13 O -0.527 6.527 14 C -0.149 4.149 15 C -0.154 4.154 16 S 0.312 5.688 17 C -0.204 4.204 18 N 0.064 4.936 19 O -0.145 6.145 20 O -0.159 6.159 21 C -0.011 4.011 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.198 0.802 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.376 -14.091 5.945 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.314 5.314 3 C 0.095 3.905 4 C -0.575 4.575 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.354 3.646 13 O -0.404 6.404 14 C -0.166 4.166 15 C -0.294 4.294 16 S 0.579 5.421 17 C -0.404 4.404 18 N 0.584 4.416 19 O -0.363 6.363 20 O -0.373 6.373 21 C -0.047 4.047 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.215 0.785 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.030 -15.187 5.086 17.113 hybrid contribution 0.001 2.113 1.118 2.391 sum -6.029 -13.073 6.204 15.676 Atomic orbital electron populations 1.22059 0.80858 1.03900 1.00213 1.47744 1.06402 1.06890 1.70396 1.19795 0.92662 0.79328 0.98738 1.21281 1.37625 1.07540 0.91017 0.90699 1.24850 0.95068 0.97257 0.95680 1.69890 1.41026 1.23580 1.18706 0.86844 0.80181 0.79861 0.82787 1.19793 1.20910 1.18964 1.17218 0.86772 0.82268 0.78330 1.90811 1.12884 1.86669 1.50069 1.20354 0.94310 0.97546 1.04358 1.26224 1.05384 0.96506 1.01246 1.83387 1.03264 1.09473 1.45995 1.25910 0.93948 1.01876 1.18667 1.42507 1.00355 1.00409 0.98310 1.94581 1.49232 1.55251 1.37250 1.94572 1.77907 1.03033 1.61821 1.21971 0.93467 0.94720 0.94493 0.92875 0.89567 0.92104 0.94642 0.94068 0.92379 0.78508 0.79970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.88 59.84 0.53 1.58 15 2 N -0.58 -11.29 2.86 -184.33 -0.53 -11.82 15 3 C 0.21 4.98 4.23 -5.20 -0.02 4.95 15 4 C -0.54 -14.77 9.94 -34.45 -0.34 -15.12 15 5 H 0.07 2.26 8.06 -52.49 -0.42 1.84 15 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 15 7 N -0.89 -26.75 13.96 55.43 0.77 -25.98 15 8 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 15 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.26 -5.87 6.54 56.52 0.37 -5.50 15 12 C 0.57 10.90 7.50 -12.62 -0.09 10.80 15 13 O -0.53 -12.08 16.51 5.25 0.09 -12.00 15 14 C -0.15 -2.11 5.38 -104.63 -0.56 -2.67 15 15 C -0.15 -1.77 10.68 29.93 0.32 -1.45 15 16 S 0.31 2.91 22.79 -107.50 -2.45 0.46 15 17 C -0.20 -2.40 7.44 -11.50 -0.09 -2.49 15 18 N 0.06 0.83 4.45 33.26 0.15 0.98 15 19 O -0.15 -1.98 18.91 -29.46 -0.56 -2.54 15 20 O -0.16 -2.12 19.05 -29.46 -0.56 -2.69 15 21 C -0.01 -0.13 7.62 -39.02 -0.30 -0.43 15 22 H 0.05 0.60 6.98 -51.93 -0.36 0.24 15 23 H 0.09 1.27 8.03 -51.93 -0.42 0.85 15 24 H 0.06 0.78 5.76 -51.93 -0.30 0.48 15 25 H 0.04 0.77 7.13 -51.93 -0.37 0.40 15 26 H 0.04 1.01 6.79 -51.93 -0.35 0.66 15 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 28 H 0.20 2.04 8.06 -52.49 -0.42 1.62 15 29 H 0.18 1.96 5.44 -52.49 -0.29 1.68 15 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -32.74 278.45 -6.31 -39.05 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -2.10 Total: -2.94 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.65 Total: -2.82 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.40 Total: -36.82 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.03 Total: -17.22 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.45 Total: 0.46 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.74 -6.31 -39.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193376628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.260 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds