Wall clock time and date at job start Mon Mar 30 2020 00:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00251 * 2 1 4 4 C 1.50690 * 109.47373 * 270.00571 * 3 2 1 5 5 H 1.08002 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00188 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00174 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99990 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47394 * 90.00049 * 8 6 4 10 10 H 1.48505 * 109.47141 * 210.00520 * 8 6 4 11 11 H 1.48508 * 109.46901 * 330.00059 * 8 6 4 12 12 C 1.34778 * 119.99829 * 180.02562 * 2 1 3 13 13 O 1.21631 * 119.99939 * 184.28291 * 12 2 1 14 14 C 1.47190 * 119.99885 * 4.27770 * 12 2 1 15 15 C 1.36012 * 123.45785 * 145.83234 * 14 12 2 16 16 S 1.70448 * 110.81635 * 179.69615 * 15 14 12 17 17 C 1.75507 * 92.44464 * 0.26538 * 16 15 14 18 18 N 1.48025 * 124.71248 * 179.97438 * 17 16 15 19 19 O 1.21806 * 120.00353 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00312 * 0.02562 * 18 17 16 21 21 C 1.32771 * 110.57525 * 359.97438 * 17 16 15 22 22 H 1.09006 * 109.47507 * 264.16164 * 1 2 3 23 23 H 1.09000 * 109.47471 * 24.15676 * 1 2 3 24 24 H 1.08995 * 109.47719 * 144.16209 * 1 2 3 25 25 H 1.09002 * 109.46793 * 30.00422 * 3 2 1 26 26 H 1.08999 * 109.47204 * 149.99950 * 3 2 1 27 27 H 0.97007 * 119.99794 * 180.02562 * 7 6 4 28 28 H 1.08001 * 124.59022 * 359.95773 * 15 14 12 29 29 H 1.08001 * 123.45882 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2416 6 6 3.1268 2.8775 -1.6726 7 7 3.3455 3.2575 -2.9126 8 14 3.7340 3.9286 -0.2527 9 1 5.1070 3.5067 0.1238 10 1 3.7498 5.3554 -0.6645 11 1 2.8274 3.7595 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3526 -1.1688 0.0781 14 6 1.4059 -2.4401 -0.0962 15 6 1.8856 -3.5346 -0.7456 16 16 0.7806 -4.8289 -0.6491 17 6 -0.3652 -3.8797 0.2818 18 7 -1.6714 -4.3766 0.7698 19 8 -2.4021 -3.6417 1.4099 20 8 -2.0157 -5.5204 0.5314 21 6 0.1023 -2.6542 0.4874 22 1 -0.3634 -0.1045 1.0224 23 1 -0.3634 0.9377 -0.4205 24 1 -0.3634 -0.8330 -0.6016 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5138 27 1 3.8231 4.0830 -3.0897 28 1 2.8394 -3.5791 -1.2502 29 1 -0.4357 -1.8962 1.0373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193376628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:00 Heat of formation + Delta-G solvation = -9.596008 kcal Electronic energy + Delta-G solvation = -17951.454623 eV Core-core repulsion = 14776.851027 eV Total energy + Delta-G solvation = -3174.603596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.24847 -41.26649 -38.47868 -37.70388 -36.85731 -34.71797 -32.28937 -30.77526 -28.02331 -27.47717 -26.31864 -23.90972 -22.39448 -21.02107 -19.95398 -19.59577 -19.17948 -18.79114 -18.20373 -17.58620 -17.12481 -16.26874 -16.08791 -15.31228 -14.84833 -14.59390 -14.39554 -14.20150 -13.88339 -13.65479 -13.23662 -12.85806 -12.85061 -12.66771 -12.52680 -12.40698 -12.35145 -12.07653 -11.77677 -11.09681 -10.88161 -10.85201 -9.89636 -9.55147 -8.36590 -6.42962 -1.47694 -0.62753 -0.24466 0.12468 0.46368 0.58717 1.33795 1.37048 1.45428 1.84386 2.24737 2.29615 2.97991 3.25926 3.39800 3.80466 3.87213 4.19302 4.31285 4.44445 4.54856 4.75041 4.83282 4.89047 5.00762 5.39357 5.45340 6.17311 6.33610 6.45397 6.58792 7.06930 7.23830 8.79972 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.004640 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.775053 B = 6033.567782 C = 6417.834841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.222 3.778 4 C -0.541 4.541 5 H 0.031 0.969 6 C 0.014 3.986 7 N -0.944 5.944 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.235 1.235 12 C 0.565 3.435 13 O -0.579 6.579 14 C -0.176 4.176 15 C -0.151 4.151 16 S 0.410 5.590 17 C -0.222 4.222 18 N 0.065 4.935 19 O -0.159 6.159 20 O -0.163 6.163 21 C -0.003 4.003 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.269 0.731 28 H 0.206 0.794 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -15.223 7.358 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C 0.100 3.900 4 C -0.580 4.580 5 H 0.049 0.951 6 C -0.185 4.185 7 N -0.583 5.583 8 Si 0.769 3.231 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.158 1.158 12 C 0.352 3.648 13 O -0.460 6.460 14 C -0.193 4.193 15 C -0.292 4.292 16 S 0.677 5.323 17 C -0.422 4.422 18 N 0.583 4.417 19 O -0.375 6.375 20 O -0.377 6.377 21 C -0.038 4.038 22 H 0.108 0.892 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.222 0.778 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.066 -16.342 6.520 18.961 hybrid contribution 0.288 2.281 0.550 2.364 sum -6.778 -14.062 7.070 17.136 Atomic orbital electron populations 1.22357 0.77878 1.04357 1.02886 1.47803 1.08340 1.05887 1.70306 1.19474 0.93089 0.81747 0.95679 1.21525 1.37161 1.07015 0.92258 0.95110 1.25832 0.95197 0.98865 0.98599 1.70043 1.42452 1.24506 1.21323 0.85734 0.79702 0.77749 0.79909 1.20057 1.20182 1.15845 1.17848 0.86486 0.83636 0.76827 1.90765 1.15205 1.87669 1.52396 1.19832 0.95565 0.96056 1.07831 1.26543 1.06203 0.96886 0.99531 1.83202 1.00129 1.06150 1.42797 1.26046 0.93907 1.02647 1.19581 1.42604 1.00644 1.00293 0.98135 1.94582 1.49811 1.55274 1.37790 1.94565 1.78165 1.03157 1.61835 1.21840 0.92448 0.95284 0.94277 0.89174 0.90180 0.90483 0.92451 0.95539 0.92179 0.77753 0.78930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 8.88 127.77 1.13 2.95 15 2 N -0.59 -22.81 2.86 -855.34 -2.44 -25.25 15 3 C 0.22 10.26 4.23 85.63 0.36 10.63 15 4 C -0.54 -30.65 9.94 25.60 0.25 -30.40 15 5 H 0.03 1.95 8.06 -2.91 -0.02 1.93 15 6 C 0.01 0.77 5.47 84.65 0.46 1.24 15 7 N -0.94 -58.15 13.96 21.45 0.30 -57.85 15 8 Si 0.95 42.78 27.47 68.60 1.88 44.66 15 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 11 H -0.24 -9.44 6.54 99.48 0.65 -8.79 15 12 C 0.57 21.69 7.50 86.59 0.65 22.34 15 13 O -0.58 -27.25 16.51 -4.13 -0.07 -27.32 15 14 C -0.18 -4.77 5.38 -19.87 -0.11 -4.87 15 15 C -0.15 -3.18 10.68 67.30 0.72 -2.47 15 16 S 0.41 6.26 22.79 -56.49 -1.29 4.98 15 17 C -0.22 -4.60 7.44 80.75 0.60 -4.00 15 18 N 0.06 1.53 4.45 -48.68 -0.22 1.32 15 19 O -0.16 -4.02 18.91 18.88 0.36 -3.66 15 20 O -0.16 -3.94 19.05 18.88 0.36 -3.58 15 21 C 0.00 -0.07 7.62 22.67 0.17 0.10 15 22 H 0.09 1.78 6.98 -2.38 -0.02 1.77 15 23 H 0.08 2.26 8.03 -2.39 -0.02 2.24 15 24 H 0.08 1.84 5.76 -2.39 -0.01 1.82 15 25 H 0.06 2.40 7.13 -2.39 -0.02 2.38 15 26 H 0.03 1.31 6.79 -2.39 -0.02 1.29 15 27 H 0.27 15.42 8.31 -92.70 -0.77 14.65 15 28 H 0.21 3.94 8.06 -2.91 -0.02 3.92 15 29 H 0.19 3.64 5.44 -2.91 -0.02 3.63 15 Total: -1.00 -73.81 278.45 4.28 -69.52 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.15 Total: 1.67 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 4.25 Total: -4.49 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.36 Total: -81.78 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: 0.65 Total: -34.56 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.29 Total: 4.98 kcal Total: -73.81 4.28 -69.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193376628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.927 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds