Wall clock time and date at job start Mon Mar 30 2020 00:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.47079 * 2 1 4 4 C 1.50698 * 109.47394 * 119.99476 * 2 1 3 5 5 H 1.07998 * 119.99908 * 85.86769 * 4 2 1 6 6 C 1.37878 * 120.00135 * 265.88047 * 4 2 1 7 7 N 1.31519 * 120.00102 * 177.63535 * 6 4 2 8 8 Si 1.86800 * 120.00137 * 357.63154 * 6 4 2 9 9 H 1.48500 * 109.47118 * 274.92529 * 8 6 4 10 10 H 1.48498 * 109.47052 * 34.92515 * 8 6 4 11 11 H 1.48499 * 109.47114 * 154.92850 * 8 6 4 12 12 N 1.46499 * 109.47251 * 239.99810 * 2 1 3 13 13 C 1.34777 * 119.99846 * 85.00229 * 12 2 1 14 14 O 1.21634 * 119.99812 * 359.97438 * 13 12 2 15 15 C 1.47191 * 119.99369 * 179.97438 * 13 12 2 16 16 C 1.36008 * 123.46540 * 0.02562 * 15 13 12 17 17 S 1.70448 * 110.81510 * 179.97438 * 16 15 13 18 18 C 1.75505 * 92.44568 * 359.97438 * 17 16 15 19 19 N 1.48035 * 124.70877 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99806 * 180.02562 * 19 18 17 21 21 O 1.21793 * 119.99942 * 0.02567 * 19 18 17 22 22 C 1.32767 * 110.57505 * 359.71643 * 18 17 16 23 23 H 1.08998 * 109.46521 * 56.14305 * 1 2 3 24 24 H 1.08997 * 109.46643 * 176.14248 * 1 2 3 25 25 H 1.09001 * 109.46913 * 296.14087 * 1 2 3 26 26 H 0.97000 * 120.00164 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99704 * 264.99331 * 12 2 1 28 28 H 1.07993 * 124.59108 * 359.97438 * 16 15 13 29 29 H 1.07999 * 123.45386 * 180.25201 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 1 2.1489 -1.7839 1.2245 6 6 2.3432 0.0105 2.3640 7 7 2.7372 -0.6134 3.4527 8 14 2.2046 1.8734 2.3536 9 1 3.4567 2.4598 1.8119 10 1 1.0585 2.2797 1.5012 11 1 1.9885 2.3614 3.7393 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8575 1.1618 -2.4118 15 6 2.6384 -0.7121 -3.5587 16 6 2.9816 -2.0281 -3.5772 17 16 3.5054 -2.4956 -5.1303 18 6 3.2591 -0.8842 -5.7807 19 7 3.5230 -0.4920 -7.1835 20 8 3.3217 0.6541 -7.5436 21 8 3.9413 -1.3152 -7.9776 22 6 2.7981 -0.0673 -4.8411 23 1 -0.3632 0.5725 -0.8534 24 1 -0.3632 -1.0253 -0.0691 25 1 -0.3633 0.4528 0.9226 26 1 2.9561 -0.1063 4.2500 27 1 2.2492 -1.6318 -1.1525 28 1 2.9293 -2.6874 -2.7235 29 1 2.5701 0.9736 -5.0167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194639842.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:50 Heat of formation + Delta-G solvation = -29.657131 kcal Electronic energy + Delta-G solvation = -17650.230555 eV Core-core repulsion = 14474.757043 eV Total energy + Delta-G solvation = -3175.473511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.28172 -41.08885 -38.53513 -37.74712 -36.77059 -34.49439 -32.79343 -31.13988 -27.74837 -27.34849 -26.16674 -23.41334 -22.00476 -21.11539 -20.95028 -19.53785 -19.18649 -18.82800 -18.06947 -17.83916 -16.87886 -16.16990 -16.09307 -15.18804 -14.71508 -14.59048 -14.40884 -14.27120 -14.15311 -13.31816 -13.10158 -12.90085 -12.86070 -12.73254 -12.56118 -12.45837 -12.42516 -11.90390 -11.25009 -11.08359 -10.90830 -10.87516 -10.07362 -9.77833 -8.40852 -6.47386 -1.50348 -0.63399 -0.31204 0.13369 0.46870 0.53094 1.28358 1.34525 1.43468 2.13811 2.23777 2.26280 3.00779 3.37472 3.58041 3.76285 4.02775 4.29221 4.42420 4.53573 4.72207 4.79458 4.96680 5.06969 5.32085 5.42793 5.62419 6.07516 6.28774 6.57353 6.74568 7.16382 7.29437 8.73408 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.004311 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.777999 B = 6493.623675 C = 6866.520302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.030 0.970 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.920 3.080 9 H -0.276 1.276 10 H -0.254 1.254 11 H -0.279 1.279 12 N -0.689 5.689 13 C 0.565 3.435 14 O -0.589 6.589 15 C -0.179 4.179 16 C -0.154 4.154 17 S 0.424 5.576 18 C -0.228 4.228 19 N 0.063 4.937 20 O -0.184 6.184 21 O -0.146 6.146 22 C 0.013 3.987 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.271 0.729 27 H 0.409 0.591 28 H 0.228 0.772 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -6.970 -16.049 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.131 3.869 3 H 0.048 0.952 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.165 4.165 7 N -0.565 5.565 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.178 1.178 11 H -0.204 1.204 12 N -0.338 5.338 13 C 0.350 3.650 14 O -0.472 6.472 15 C -0.196 4.196 16 C -0.294 4.294 17 S 0.691 5.309 18 C -0.427 4.427 19 N 0.581 4.419 20 O -0.393 6.393 21 O -0.365 6.365 22 C -0.022 4.022 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.245 0.755 28 H 0.244 0.756 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.329 -7.646 -15.827 17.627 hybrid contribution -0.353 2.245 0.846 2.425 sum 0.976 -5.401 -14.981 15.955 Atomic orbital electron populations 1.22150 0.96842 1.01415 0.99876 1.18928 0.92124 0.93162 0.82655 0.95175 1.21147 1.44457 0.95191 0.95525 0.91760 1.25543 0.93755 1.01989 0.95223 1.69954 1.45786 1.37710 1.03051 0.86153 0.79775 0.81809 0.77709 1.20209 1.17827 1.20446 1.46176 1.64438 1.14481 1.08685 1.17829 0.77804 0.86111 0.83230 1.90764 1.53379 1.17341 1.85692 1.19750 1.11832 0.94398 0.93607 1.26897 0.97269 0.98727 1.06533 1.83230 1.55717 0.97716 0.94260 1.26085 1.24324 1.05660 0.86668 1.42673 0.97420 1.00338 1.01457 1.94609 1.57317 1.04851 1.82509 1.94533 1.46187 1.47062 1.48765 1.21268 0.89750 1.01921 0.89271 0.94552 0.91798 0.93132 0.92007 0.75469 0.75563 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 9.44 71.98 0.68 -5.04 15 2 C 0.23 10.23 2.16 44.25 0.10 10.32 15 3 H 0.03 1.47 4.89 -2.39 -0.01 1.46 15 4 C -0.52 -26.25 9.05 25.60 0.23 -26.01 15 5 H 0.06 3.35 8.06 -2.91 -0.02 3.33 15 6 C 0.04 1.92 5.47 84.65 0.46 2.38 15 7 N -0.93 -52.69 13.96 21.45 0.30 -52.39 15 8 Si 0.92 42.67 26.74 68.60 1.83 44.50 15 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 10 H -0.25 -11.46 6.87 99.48 0.68 -10.78 15 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 12 N -0.69 -23.90 5.04 -449.58 -2.27 -26.16 15 13 C 0.56 19.40 7.76 86.59 0.67 20.08 15 14 O -0.59 -25.40 16.46 -4.14 -0.07 -25.46 15 15 C -0.18 -4.36 5.98 -19.87 -0.12 -4.48 15 16 C -0.15 -2.29 10.38 67.30 0.70 -1.59 15 17 S 0.42 5.33 22.79 -56.49 -1.29 4.04 15 18 C -0.23 -4.93 7.44 80.75 0.60 -4.33 15 19 N 0.06 1.63 4.45 -48.67 -0.22 1.41 15 20 O -0.18 -5.34 18.91 18.88 0.36 -4.98 15 21 O -0.15 -3.61 19.05 18.89 0.36 -3.25 15 22 C 0.01 0.33 9.69 22.67 0.22 0.55 15 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.05 2.05 7.92 -2.39 -0.02 2.04 15 26 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 27 H 0.41 11.23 7.09 -92.71 -0.66 10.57 15 28 H 0.23 1.91 7.01 -2.91 -0.02 1.88 15 29 H 0.17 4.44 8.01 -2.91 -0.02 4.42 15 Total: -1.00 -67.23 283.42 3.09 -64.14 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.53 Total: 6.28 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 3.54 Total: -8.13 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.18 Total: -77.14 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: 0.65 Total: -33.70 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.83 Total: 44.50 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.29 Total: 4.04 kcal Total: -67.23 3.09 -64.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194639842.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.487 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds