Wall clock time and date at job start Mon Mar 30 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47150 * 2 1 4 4 C 1.50700 * 109.46936 * 240.00475 * 2 1 3 5 5 H 1.08004 * 119.99895 * 275.00436 * 4 2 1 6 6 C 1.37874 * 120.00159 * 95.00638 * 4 2 1 7 7 N 1.31518 * 120.00062 * 184.91466 * 6 4 2 8 8 Si 1.86800 * 119.99828 * 4.90769 * 6 4 2 9 9 H 1.48507 * 109.46995 * 84.83948 * 8 6 4 10 10 H 1.48505 * 109.47289 * 204.83561 * 8 6 4 11 11 H 1.48499 * 109.47172 * 324.83817 * 8 6 4 12 12 N 1.46503 * 109.47044 * 120.00629 * 2 1 3 13 13 C 1.34771 * 119.99652 * 275.00004 * 12 2 1 14 14 O 1.21637 * 120.00537 * 0.02562 * 13 12 2 15 15 C 1.47193 * 120.00014 * 179.97438 * 13 12 2 16 16 C 1.36008 * 123.45697 * 359.70489 * 15 13 12 17 17 S 1.70452 * 110.81409 * 179.85737 * 16 15 13 18 18 C 1.75500 * 92.44501 * 0.34410 * 17 16 15 19 19 N 1.48036 * 124.71328 * 179.81872 * 18 17 16 20 20 O 1.21794 * 119.99958 * 179.97438 * 19 18 17 21 21 O 1.21799 * 119.99798 * 359.97438 * 19 18 17 22 22 C 1.32769 * 110.57925 * 359.80820 * 18 17 16 23 23 H 1.09002 * 109.47162 * 175.03251 * 1 2 3 24 24 H 1.09000 * 109.47032 * 295.02920 * 1 2 3 25 25 H 1.08998 * 109.47184 * 55.03427 * 1 2 3 26 26 H 0.97005 * 119.99374 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00019 * 94.99417 * 12 2 1 28 28 H 1.08004 * 124.59170 * 359.97438 * 16 15 13 29 29 H 1.07996 * 123.46051 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1354 -1.7854 -1.2292 6 6 2.3603 0.0122 -2.3580 7 7 2.7060 -0.6129 -3.4623 8 14 2.3136 1.8792 -2.3172 9 1 3.5992 2.3950 -1.7819 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3275 -1.4448 12 7 2.0184 -0.6908 1.1961 13 6 2.1470 -0.0185 2.3571 14 8 1.8573 1.1616 2.4120 15 6 2.6371 -0.7126 3.5590 16 6 2.9743 -2.0300 3.5790 17 16 3.5030 -2.4964 5.1309 18 6 3.2581 -0.8848 5.7810 19 7 3.5218 -0.4925 7.1838 20 8 3.3215 0.6537 7.5436 21 8 3.9392 -1.3161 7.9782 22 6 2.8035 -0.0660 4.8398 23 1 -0.3633 -1.0238 -0.0890 24 1 -0.3633 0.4348 0.9312 25 1 -0.3633 0.5889 -0.8421 26 1 2.9364 -0.1045 -4.2556 27 1 2.2490 -1.6319 1.1525 28 1 2.9168 -2.6907 2.7265 29 1 2.5808 0.9762 5.0140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194639855.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:52 Heat of formation + Delta-G solvation = -9.261274 kcal Electronic energy + Delta-G solvation = -17651.579853 eV Core-core repulsion = 14476.990773 eV Total energy + Delta-G solvation = -3174.589081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.26781 -39.77450 -37.40224 -36.70830 -35.10216 -32.67363 -31.54463 -29.66312 -26.77095 -25.51008 -24.96212 -22.17285 -20.52800 -20.01346 -19.64797 -18.53095 -17.81847 -17.66901 -16.90430 -16.34527 -15.41201 -14.77962 -14.53209 -13.79531 -13.60513 -13.32871 -13.13616 -12.64418 -12.52880 -11.87909 -11.83249 -11.65540 -11.54657 -11.39167 -11.23941 -10.95551 -10.73042 -10.01819 -10.00227 -9.60996 -9.36999 -9.08963 -8.84527 -8.35111 -6.36977 -4.42400 -0.55032 0.21746 0.69434 1.01807 1.37348 1.57014 3.16423 3.25593 3.31720 3.45343 3.58810 4.20521 4.23096 4.55157 4.71918 4.99581 5.12517 5.21814 5.50593 5.99017 6.18159 6.36207 6.51590 6.75787 6.99016 7.17261 7.33422 7.35414 7.90801 8.32017 8.57639 8.65762 9.23805 10.74260 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.035483 B = 0.004323 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.930806 B = 6476.083272 C = 6840.392465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.690 5.690 13 C 0.561 3.439 14 O -0.544 6.544 15 C -0.148 4.148 16 C -0.178 4.178 17 S 0.317 5.683 18 C -0.206 4.206 19 N 0.063 4.937 20 O -0.144 6.144 21 O -0.158 6.158 22 C 0.019 3.981 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.270 0.730 27 H 0.392 0.608 28 H 0.197 0.803 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -5.080 14.869 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.520 5.520 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.338 5.338 13 C 0.344 3.656 14 O -0.424 6.424 15 C -0.166 4.166 16 C -0.318 4.318 17 S 0.583 5.417 18 C -0.405 4.405 19 N 0.584 4.416 20 O -0.362 6.362 21 O -0.373 6.373 22 C -0.016 4.016 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.226 0.774 28 H 0.214 0.786 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.234 -5.804 14.613 15.772 hybrid contribution -0.295 1.904 -0.565 2.008 sum 0.939 -3.900 14.048 14.609 Atomic orbital electron populations 1.22229 0.98202 1.00781 0.99523 1.19233 0.91159 0.94454 0.82226 0.92863 1.20953 1.45850 0.95596 0.94867 0.90263 1.24941 0.93398 0.98779 0.95116 1.69873 1.44092 1.36366 1.01702 0.86899 0.79897 0.85589 0.77607 1.19745 1.20997 1.18387 1.46608 1.63994 1.13773 1.09458 1.17415 0.79073 0.86650 0.82500 1.90792 1.51519 1.15223 1.84867 1.20418 1.07752 0.92987 0.95411 1.26438 1.00979 0.99997 1.04415 1.83397 1.59216 1.01792 0.97257 1.25902 1.23476 1.03360 0.87808 1.42499 0.97753 1.00545 1.00815 1.94594 1.55499 1.04265 1.81823 1.94566 1.47159 1.47373 1.48181 1.21424 0.89202 1.02086 0.88906 0.93282 0.95099 0.92591 0.92047 0.77404 0.78631 0.80196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.47 37.16 0.35 -2.69 15 2 C 0.23 5.12 2.22 -69.08 -0.15 4.97 15 3 H 0.05 1.30 4.73 -51.93 -0.25 1.06 15 4 C -0.53 -13.48 9.05 -34.44 -0.31 -13.79 15 5 H 0.08 2.09 8.06 -52.48 -0.42 1.66 15 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 15 7 N -0.88 -24.94 13.96 55.43 0.77 -24.17 15 8 Si 0.87 20.64 26.99 -169.99 -4.59 16.05 15 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.26 -6.02 6.82 56.52 0.39 -5.64 15 12 N -0.69 -12.50 5.04 -56.08 -0.28 -12.78 15 13 C 0.56 9.90 7.76 -12.63 -0.10 9.80 15 14 O -0.54 -11.64 16.46 5.24 0.09 -11.55 15 15 C -0.15 -1.95 5.98 -104.63 -0.63 -2.58 15 16 C -0.18 -1.70 10.38 29.93 0.31 -1.39 15 17 S 0.32 2.72 22.79 -107.50 -2.45 0.27 15 18 C -0.21 -2.45 7.44 -11.50 -0.09 -2.53 15 19 N 0.06 0.85 4.45 33.26 0.15 0.99 15 20 O -0.14 -2.07 18.91 -29.46 -0.56 -2.62 15 21 O -0.16 -2.13 19.05 -29.46 -0.56 -2.70 15 22 C 0.02 0.24 9.69 -39.02 -0.38 -0.14 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 27 H 0.39 5.88 7.09 -40.82 -0.29 5.59 15 28 H 0.20 1.35 7.01 -52.48 -0.37 0.99 15 29 H 0.18 2.31 8.01 -52.49 -0.42 1.89 15 LS Contribution 283.76 15.07 4.28 4.28 Total: -1.00 -30.53 283.76 -6.41 -36.93 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -2.17 Total: 1.53 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.09 Total: -6.23 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.64 Total: -35.95 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.03 Total: -16.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.59 Total: 16.05 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.45 Total: 0.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.53 -6.41 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194639855.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.670 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds