Wall clock time and date at job start Mon Mar 30 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47012 * 2 1 4 4 C 1.50700 * 109.47081 * 119.99334 * 2 1 3 5 5 H 1.08004 * 119.99706 * 120.00170 * 4 2 1 6 6 C 1.37877 * 120.00224 * 300.00571 * 4 2 1 7 7 N 1.31511 * 120.00161 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99874 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47071 * 89.99935 * 8 6 4 10 10 H 1.48494 * 109.47265 * 209.99591 * 8 6 4 11 11 H 1.48501 * 109.47390 * 329.99806 * 8 6 4 12 12 N 1.46498 * 109.47496 * 239.99726 * 2 1 3 13 13 C 1.34775 * 119.99794 * 84.99413 * 12 2 1 14 14 O 1.21702 * 120.00321 * 0.02562 * 13 12 2 15 15 C 1.46585 * 119.99834 * 180.02562 * 13 12 2 16 16 C 1.36641 * 125.45956 * 180.02562 * 15 13 12 17 17 C 1.37477 * 113.29948 * 180.02562 * 16 15 13 18 18 C 1.33814 * 115.09811 * 0.02562 * 17 16 15 19 19 N 1.48032 * 124.52082 * 180.02562 * 18 17 16 20 20 O 1.21794 * 120.00088 * 359.97438 * 19 18 17 21 21 O 1.21802 * 119.99840 * 179.97438 * 19 18 17 22 22 S 1.70620 * 110.95828 * 359.97438 * 18 17 16 23 23 H 1.09008 * 109.47061 * 300.00456 * 1 2 3 24 24 H 1.09001 * 109.47275 * 60.00477 * 1 2 3 25 25 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 26 26 H 0.96996 * 120.00329 * 179.97438 * 7 6 4 27 27 H 0.96996 * 119.99663 * 265.00695 * 12 2 1 28 28 H 1.08006 * 123.35339 * 359.96580 * 16 15 13 29 29 H 1.08001 * 122.44912 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.6296 -0.5455 4.4125 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5660 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8579 1.1626 -2.4117 15 6 2.6352 -0.7095 -3.5540 16 6 2.8083 -0.1391 -4.7836 17 6 3.2790 -1.0186 -5.7296 18 6 3.4843 -2.2665 -5.2922 19 7 3.9870 -3.3775 -6.1314 20 8 4.2433 -3.1854 -7.3064 21 8 4.1443 -4.4838 -5.6467 22 16 3.0908 -2.4058 -3.6379 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7087 1.1615 3.4843 27 1 2.2490 -1.6318 -1.1524 28 1 2.5956 0.8991 -4.9918 29 1 3.4684 -0.7241 -6.7513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194670396.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:47 Heat of formation + Delta-G solvation = -7.399169 kcal Electronic energy + Delta-G solvation = -17555.335165 eV Core-core repulsion = 14380.826831 eV Total energy + Delta-G solvation = -3174.508334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.29303 -39.60771 -37.99889 -36.75123 -35.09912 -32.71243 -31.28128 -29.29034 -27.01619 -25.42572 -24.27793 -22.42948 -20.66814 -20.33033 -19.60409 -18.63342 -17.84173 -17.34497 -16.69792 -15.94679 -15.41249 -14.82317 -14.64412 -14.16977 -13.46606 -13.25655 -13.02192 -12.63253 -11.92666 -11.85712 -11.73906 -11.44083 -11.40525 -11.24230 -11.12072 -10.96293 -10.48358 -10.38760 -9.71948 -9.69567 -9.26282 -9.23854 -8.73772 -8.28490 -6.27459 -4.38229 -0.74483 0.27169 0.76119 1.04810 1.40519 1.86964 3.16258 3.23073 3.24561 3.30088 3.49177 4.22742 4.37051 4.68117 4.86307 5.05719 5.15623 5.49560 5.61734 5.97799 6.61535 6.71311 6.91434 7.07532 7.25781 7.34287 7.49501 7.68138 7.94278 8.25196 8.45787 8.70611 9.29541 10.78509 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.004345 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.270153 B = 6442.503977 C = 7125.772256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.055 0.945 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.693 5.693 13 C 0.566 3.434 14 O -0.523 6.523 15 C -0.190 4.190 16 C -0.089 4.089 17 C -0.047 4.047 18 C -0.216 4.216 19 N 0.063 4.937 20 O -0.145 6.145 21 O -0.159 6.159 22 S 0.341 5.659 23 H 0.095 0.905 24 H 0.017 0.983 25 H 0.029 0.971 26 H 0.267 0.733 27 H 0.387 0.613 28 H 0.176 0.824 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -5.151 -12.561 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.163 3.837 3 H 0.073 0.927 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.341 5.341 13 C 0.348 3.652 14 O -0.401 6.401 15 C -0.314 4.314 16 C -0.121 4.121 17 C -0.085 4.085 18 C -0.419 4.419 19 N 0.583 4.417 20 O -0.364 6.364 21 O -0.373 6.373 22 S 0.611 5.389 23 H 0.113 0.887 24 H 0.036 0.964 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.220 0.780 28 H 0.194 0.806 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.800 -4.903 -10.906 12.281 hybrid contribution 0.548 -0.018 -0.563 0.785 sum 3.348 -4.921 -11.469 12.921 Atomic orbital electron populations 1.22111 0.97854 0.99525 1.01317 1.18939 0.91413 0.94121 0.79214 0.92717 1.21155 1.33078 1.13574 0.90086 0.91876 1.24878 0.94591 0.94907 0.99142 1.69881 1.35409 1.22271 1.24226 0.86401 0.78682 0.79870 0.81915 1.20427 1.20930 1.19712 1.46632 1.63721 1.13352 1.10352 1.16876 0.79718 0.86718 0.81873 1.90849 1.50781 1.14465 1.84027 1.26045 1.06835 0.97914 1.00619 1.20705 0.99555 1.02363 0.89436 1.20188 0.95513 0.89511 1.03256 1.25701 1.21872 0.93642 1.00678 1.42513 0.97806 1.00734 1.00621 1.94552 1.53474 1.89420 0.98929 1.94595 1.57110 1.08900 1.76654 1.83682 1.54706 1.04641 0.95906 0.88678 0.96420 0.95143 0.92329 0.77973 0.80620 0.81174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.26 37.16 0.34 -3.12 15 2 C 0.26 6.25 2.56 -69.08 -0.18 6.07 15 3 H 0.06 1.49 7.58 -51.93 -0.39 1.09 15 4 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 15 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.88 -23.60 11.32 55.43 0.63 -22.97 15 8 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 15 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 12 N -0.69 -13.25 5.06 -56.27 -0.29 -13.54 15 13 C 0.57 10.26 7.75 -12.90 -0.10 10.16 15 14 O -0.52 -11.28 16.50 5.19 0.09 -11.19 15 15 C -0.19 -2.59 6.45 -36.79 -0.24 -2.82 15 16 C -0.09 -1.01 10.01 -40.44 -0.40 -1.42 15 17 C -0.05 -0.48 9.75 -41.41 -0.40 -0.88 15 18 C -0.22 -2.58 7.28 -11.18 -0.08 -2.66 15 19 N 0.06 0.84 4.45 32.56 0.15 0.98 15 20 O -0.15 -1.96 18.89 -29.46 -0.56 -2.52 15 21 O -0.16 -2.24 18.99 -29.46 -0.56 -2.80 15 22 S 0.34 3.94 21.85 -107.50 -2.35 1.59 15 23 H 0.09 2.41 6.07 -51.92 -0.32 2.10 15 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 27 H 0.39 6.37 7.65 -40.82 -0.31 6.06 15 28 H 0.18 1.78 8.06 -52.48 -0.42 1.36 15 29 H 0.17 1.33 7.97 -52.49 -0.42 0.91 15 LS Contribution 284.68 15.07 4.29 4.29 Total: -1.00 -28.56 284.68 -7.33 -35.88 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.25 Total: 2.36 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.46 Total: -6.80 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.49 Total: -35.52 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.03 Total: -16.51 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.35 Total: 1.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.56 -7.33 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194670396.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.483 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds