Wall clock time and date at job start Mon Mar 30 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47012 * 2 1 4 4 C 1.50700 * 109.47081 * 119.99334 * 2 1 3 5 5 H 1.08004 * 119.99706 * 120.00170 * 4 2 1 6 6 C 1.37877 * 120.00224 * 300.00571 * 4 2 1 7 7 N 1.31511 * 120.00161 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99874 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47071 * 89.99935 * 8 6 4 10 10 H 1.48494 * 109.47265 * 209.99591 * 8 6 4 11 11 H 1.48501 * 109.47390 * 329.99806 * 8 6 4 12 12 N 1.46498 * 109.47496 * 239.99726 * 2 1 3 13 13 C 1.34775 * 119.99794 * 84.99413 * 12 2 1 14 14 O 1.21702 * 120.00321 * 0.02562 * 13 12 2 15 15 C 1.46585 * 119.99834 * 180.02562 * 13 12 2 16 16 C 1.36641 * 125.45956 * 180.02562 * 15 13 12 17 17 C 1.37477 * 113.29948 * 180.02562 * 16 15 13 18 18 C 1.33814 * 115.09811 * 0.02562 * 17 16 15 19 19 N 1.48032 * 124.52082 * 180.02562 * 18 17 16 20 20 O 1.21794 * 120.00088 * 359.97438 * 19 18 17 21 21 O 1.21802 * 119.99840 * 179.97438 * 19 18 17 22 22 S 1.70620 * 110.95828 * 359.97438 * 18 17 16 23 23 H 1.09008 * 109.47061 * 300.00456 * 1 2 3 24 24 H 1.09001 * 109.47275 * 60.00477 * 1 2 3 25 25 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 26 26 H 0.96996 * 120.00329 * 179.97438 * 7 6 4 27 27 H 0.96996 * 119.99663 * 265.00695 * 12 2 1 28 28 H 1.08006 * 123.35339 * 359.96580 * 16 15 13 29 29 H 1.08001 * 122.44912 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.6296 -0.5455 4.4125 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5660 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8579 1.1626 -2.4117 15 6 2.6352 -0.7095 -3.5540 16 6 2.8083 -0.1391 -4.7836 17 6 3.2790 -1.0186 -5.7296 18 6 3.4843 -2.2665 -5.2922 19 7 3.9870 -3.3775 -6.1314 20 8 4.2433 -3.1854 -7.3064 21 8 4.1443 -4.4838 -5.6467 22 16 3.0908 -2.4058 -3.6379 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7087 1.1615 3.4843 27 1 2.2490 -1.6318 -1.1524 28 1 2.5956 0.8991 -4.9918 29 1 3.4684 -0.7241 -6.7513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194670396.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:47 Heat of formation + Delta-G solvation = -24.865316 kcal Electronic energy + Delta-G solvation = -17556.092554 eV Core-core repulsion = 14380.826831 eV Total energy + Delta-G solvation = -3175.265723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.31668 -41.00488 -39.10185 -37.79409 -36.84258 -34.50423 -32.47424 -30.92788 -28.17009 -27.37023 -25.32445 -23.82661 -21.95334 -21.66174 -20.91624 -19.79213 -18.85721 -18.64930 -18.07331 -17.35274 -17.03828 -16.28963 -16.14978 -15.42638 -14.76676 -14.54261 -14.42024 -13.94598 -13.74886 -13.04682 -12.93765 -12.90731 -12.82074 -12.72756 -12.46216 -12.42006 -12.30580 -12.16522 -11.28351 -11.17181 -10.75999 -10.64360 -10.14510 -9.97746 -8.21535 -6.39228 -1.76394 -0.71544 -0.28511 0.08737 0.41763 0.91717 1.44979 1.45954 1.55945 1.92046 2.07471 2.42702 3.09901 3.44184 3.55743 3.81280 4.25574 4.55369 4.71742 4.75136 4.86717 4.95708 5.01694 5.30154 5.44998 5.59888 5.78664 6.02987 6.27486 6.59004 6.67785 7.08310 7.34056 8.84623 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.004345 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.270153 B = 6442.503977 C = 7125.772256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.270 3.730 3 H 0.011 0.989 4 C -0.552 4.552 5 H 0.075 0.925 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.694 5.694 13 C 0.571 3.429 14 O -0.564 6.564 15 C -0.219 4.219 16 C -0.066 4.066 17 C -0.031 4.031 18 C -0.221 4.221 19 N 0.062 4.938 20 O -0.137 6.137 21 O -0.183 6.183 22 S 0.373 5.627 23 H 0.071 0.929 24 H 0.018 0.982 25 H 0.042 0.958 26 H 0.267 0.733 27 H 0.402 0.598 28 H 0.189 0.811 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 -6.408 -13.661 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.029 0.971 4 C -0.590 4.590 5 H 0.093 0.907 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.794 3.206 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.343 5.343 13 C 0.356 3.644 14 O -0.445 6.445 15 C -0.342 4.342 16 C -0.099 4.099 17 C -0.069 4.069 18 C -0.424 4.424 19 N 0.581 4.419 20 O -0.359 6.359 21 O -0.391 6.391 22 S 0.643 5.357 23 H 0.089 0.911 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.207 0.793 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.598 -6.249 -11.989 13.991 hybrid contribution 0.330 0.409 -0.358 0.636 sum 3.928 -5.840 -12.348 14.212 Atomic orbital electron populations 1.21942 0.97695 0.99872 1.00159 1.18513 0.91524 0.92270 0.80907 0.97135 1.21505 1.33007 1.13832 0.90633 0.90732 1.25735 0.94742 0.95535 1.02175 1.70021 1.36596 1.23700 1.24808 0.85375 0.77806 0.79250 0.78127 1.20381 1.20974 1.18397 1.46321 1.64221 1.13953 1.09757 1.17246 0.78433 0.86260 0.82510 1.90822 1.52402 1.16382 1.84938 1.25471 1.09734 0.99519 0.99511 1.20923 0.97453 1.03053 0.88481 1.20417 0.93852 0.88294 1.04319 1.25843 1.21998 0.93816 1.00790 1.42643 0.97676 1.00904 1.00701 1.94541 1.52840 1.89386 0.99095 1.94607 1.58247 1.09493 1.76764 1.83606 1.54006 1.02404 0.95636 0.91066 0.96291 0.93871 0.92381 0.76331 0.79342 0.78100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.26 71.98 0.67 -5.85 15 2 C 0.27 13.08 2.56 44.24 0.11 13.19 15 3 H 0.01 0.61 7.58 -2.39 -0.02 0.59 15 4 C -0.55 -27.55 8.73 25.60 0.22 -27.33 15 5 H 0.07 3.46 7.74 -2.91 -0.02 3.44 15 6 C 0.02 0.97 5.30 84.66 0.45 1.42 15 7 N -0.91 -49.92 11.32 21.45 0.24 -49.68 15 8 Si 0.97 40.15 29.54 68.60 2.03 42.17 15 9 H -0.28 -11.43 7.11 99.48 0.71 -10.72 15 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 11 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 12 N -0.69 -26.53 5.06 -450.17 -2.28 -28.81 15 13 C 0.57 20.62 7.75 86.42 0.67 21.29 15 14 O -0.56 -24.78 16.50 -4.36 -0.07 -24.85 15 15 C -0.22 -5.60 6.45 24.08 0.16 -5.45 15 16 C -0.07 -1.33 10.01 21.72 0.22 -1.11 15 17 C -0.03 -0.53 9.75 21.08 0.21 -0.32 15 18 C -0.22 -4.65 7.28 80.92 0.59 -4.06 15 19 N 0.06 1.50 4.45 -50.89 -0.23 1.28 15 20 O -0.14 -3.30 18.89 18.89 0.36 -2.95 15 21 O -0.18 -4.85 18.99 18.88 0.36 -4.50 15 22 S 0.37 7.84 21.85 -56.49 -1.23 6.60 15 23 H 0.07 3.72 6.07 -2.38 -0.01 3.70 15 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 15 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 27 H 0.40 12.88 7.65 -92.71 -0.71 12.17 15 28 H 0.19 3.32 8.06 -2.91 -0.02 3.30 15 29 H 0.20 2.19 7.97 -2.91 -0.02 2.17 15 Total: -1.00 -61.98 284.68 2.96 -59.02 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.50 Total: 9.94 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 3.29 Total: -8.22 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.26 Total: -77.22 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: 0.64 Total: -32.30 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 7.84 SS G_CDS: -1.23 Total: 6.60 kcal Total: -61.98 2.96 -59.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194670396.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.156 kcal (2) G-P(sol) polarization free energy of solvation -61.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds