Wall clock time and date at job start Mon Mar 30 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21700 * 120.00491 * 0.02562 * 13 12 2 15 15 C 1.46589 * 119.99790 * 180.02562 * 13 12 2 16 16 C 1.36650 * 125.45507 * 179.72231 * 15 13 12 17 17 C 1.37471 * 113.29244 * 179.80130 * 16 15 13 18 18 C 1.33815 * 115.10278 * 0.49253 * 17 16 15 19 19 N 1.48023 * 124.52290 * 179.76672 * 18 17 16 20 20 O 1.21806 * 120.00244 * 359.97438 * 19 18 17 21 21 O 1.21805 * 120.00147 * 179.97438 * 19 18 17 22 22 S 1.70612 * 110.95555 * 359.72731 * 18 17 16 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.07997 * 123.35125 * 359.97438 * 16 15 13 29 29 H 1.08000 * 122.44997 * 180.24084 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8571 1.1626 2.4119 15 6 2.6361 -0.7089 3.5539 16 6 2.8140 -0.1371 4.7822 17 6 3.2808 -1.0175 5.7292 18 6 3.4889 -2.2647 5.2913 19 7 3.9925 -3.3753 6.1303 20 8 4.2480 -3.1833 7.3057 21 8 4.1514 -4.4813 5.6454 22 16 3.0951 -2.4042 3.6371 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.6057 0.9022 4.9891 29 1 3.4699 -0.7230 6.7510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194670414.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:48 Heat of formation + Delta-G solvation = -24.856049 kcal Electronic energy + Delta-G solvation = -17556.096917 eV Core-core repulsion = 14380.831596 eV Total energy + Delta-G solvation = -3175.265321 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.31439 -41.00489 -39.10234 -37.79200 -36.84266 -34.50348 -32.47428 -30.92781 -28.17029 -27.37044 -25.32488 -23.82664 -21.95342 -21.66191 -20.91621 -19.79177 -18.85605 -18.64949 -18.07322 -17.35271 -17.03865 -16.29102 -16.14787 -15.42731 -14.76584 -14.54380 -14.42042 -13.94511 -13.74888 -13.04705 -12.93728 -12.90705 -12.82075 -12.72773 -12.46175 -12.42035 -12.30635 -12.16481 -11.28361 -11.17178 -10.75983 -10.64355 -10.14538 -9.97731 -8.21570 -6.39224 -1.76460 -0.71553 -0.28559 0.08733 0.41762 0.91710 1.45007 1.45955 1.55956 1.92026 2.07458 2.42718 3.09864 3.44143 3.55738 3.81256 4.25578 4.55356 4.71696 4.75151 4.86798 4.95702 5.01698 5.30150 5.45028 5.59871 5.78679 6.03026 6.27394 6.58991 6.67793 7.08302 7.34030 8.84568 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.031577 B = 0.004346 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.520654 B = 6441.886883 C = 7125.378713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.270 3.730 3 H 0.011 0.989 4 C -0.552 4.552 5 H 0.075 0.925 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.260 1.260 11 H -0.284 1.284 12 N -0.694 5.694 13 C 0.571 3.429 14 O -0.564 6.564 15 C -0.219 4.219 16 C -0.066 4.066 17 C -0.031 4.031 18 C -0.222 4.222 19 N 0.062 4.938 20 O -0.137 6.137 21 O -0.183 6.183 22 S 0.373 5.627 23 H 0.018 0.982 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.267 0.733 27 H 0.402 0.598 28 H 0.189 0.811 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -6.402 13.652 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.029 0.971 4 C -0.590 4.590 5 H 0.093 0.907 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.795 3.205 9 H -0.204 1.204 10 H -0.184 1.184 11 H -0.210 1.210 12 N -0.343 5.343 13 C 0.356 3.644 14 O -0.445 6.445 15 C -0.342 4.342 16 C -0.099 4.099 17 C -0.069 4.069 18 C -0.425 4.425 19 N 0.581 4.419 20 O -0.359 6.359 21 O -0.391 6.391 22 S 0.644 5.356 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.207 0.793 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.618 -6.243 11.980 13.985 hybrid contribution 0.327 0.409 0.360 0.636 sum 3.945 -5.833 12.341 14.209 Atomic orbital electron populations 1.21941 0.97699 0.99867 1.00159 1.18514 0.91523 0.92269 0.80903 0.97137 1.21505 1.33004 1.13837 0.90632 0.90729 1.25740 0.94740 0.95540 1.02179 1.70026 1.36574 1.23722 1.24798 0.85373 0.77806 0.79248 0.78120 1.20379 1.18397 1.20976 1.46322 1.64223 1.13952 1.09757 1.17248 0.78441 0.86254 0.82506 1.90821 1.52393 1.16397 1.84929 1.25475 1.09710 0.99525 0.99535 1.20922 0.97465 1.03035 0.88488 1.20414 0.93863 0.88292 1.04314 1.25839 1.21994 0.93853 1.00769 1.42646 0.97682 1.00899 1.00703 1.94544 1.52894 1.89367 0.99069 1.94608 1.58223 1.09515 1.76758 1.83602 1.53850 1.02510 0.95657 0.96301 0.91058 0.93876 0.92384 0.76331 0.79345 0.78104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.26 71.98 0.67 -5.85 15 2 C 0.27 13.08 2.56 44.24 0.11 13.20 15 3 H 0.01 0.61 7.58 -2.38 -0.02 0.59 15 4 C -0.55 -27.55 8.73 25.60 0.22 -27.33 15 5 H 0.07 3.46 7.74 -2.91 -0.02 3.44 15 6 C 0.02 0.96 5.30 84.66 0.45 1.41 15 7 N -0.91 -49.92 11.32 21.45 0.24 -49.68 15 8 Si 0.97 40.15 29.54 68.60 2.03 42.17 15 9 H -0.28 -11.42 7.11 99.48 0.71 -10.72 15 10 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 12 N -0.69 -26.53 5.06 -450.16 -2.28 -28.81 15 13 C 0.57 20.62 7.75 86.42 0.67 21.29 15 14 O -0.56 -24.78 16.50 -4.35 -0.07 -24.85 15 15 C -0.22 -5.61 6.45 24.08 0.16 -5.45 15 16 C -0.07 -1.33 10.01 21.72 0.22 -1.11 15 17 C -0.03 -0.53 9.75 21.08 0.21 -0.32 15 18 C -0.22 -4.65 7.28 80.92 0.59 -4.06 15 19 N 0.06 1.50 4.45 -50.91 -0.23 1.28 15 20 O -0.14 -3.31 18.89 18.88 0.36 -2.95 15 21 O -0.18 -4.85 18.99 18.88 0.36 -4.49 15 22 S 0.37 7.84 21.85 -56.49 -1.23 6.61 15 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 24 H 0.07 3.72 6.07 -2.39 -0.01 3.71 15 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 27 H 0.40 12.88 7.65 -92.71 -0.71 12.17 15 28 H 0.19 3.32 8.06 -2.91 -0.02 3.30 15 29 H 0.20 2.19 7.97 -2.91 -0.02 2.17 15 Total: -1.00 -61.98 284.68 2.96 -59.02 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.50 Total: 9.94 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 3.29 Total: -8.23 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.26 Total: -77.21 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: 0.64 Total: -32.30 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 7.84 SS G_CDS: -1.23 Total: 6.61 kcal Total: -61.98 2.96 -59.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194670414.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.162 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds