Wall clock time and date at job start Mon Mar 30 2020 01:05:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09003 * 109.47007 * 2 1
4 4 C 1.50700 * 109.47154 * 240.00273 * 2 1 3
5 5 H 1.07994 * 119.99433 * 239.99771 * 4 2 1
6 6 C 1.37872 * 120.00247 * 60.00137 * 4 2 1
7 7 N 1.31521 * 120.00013 * 0.02562 * 6 4 2
8 8 Si 1.86796 * 120.00225 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47098 * 89.99905 * 8 6 4
10 10 H 1.48495 * 109.47406 * 209.99928 * 8 6 4
11 11 H 1.48500 * 109.47264 * 330.00179 * 8 6 4
12 12 N 1.46499 * 109.46896 * 120.00049 * 2 1 3
13 13 C 1.39755 * 119.99867 * 275.00103 * 12 2 1
14 14 C 1.38883 * 120.07913 * 0.02562 * 13 12 2
15 15 C 1.38111 * 119.93490 * 180.02562 * 14 13 12
16 16 C 1.38298 * 120.09796 * 0.02562 * 15 14 13
17 17 N 1.48007 * 119.91990 * 180.02562 * 16 15 14
18 18 O 1.21790 * 120.00190 * 0.02562 * 17 16 15
19 19 O 1.21804 * 119.99631 * 179.97438 * 17 16 15
20 20 C 1.38267 * 120.15159 * 0.02562 * 16 15 14
21 21 C 1.38206 * 120.06713 * 359.71967 * 20 16 15
22 22 Cl 1.73597 * 120.05148 * 180.30294 * 21 20 16
23 23 H 1.09005 * 109.46664 * 59.99747 * 1 2 3
24 24 H 1.08995 * 109.46863 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.47413 * 300.00100 * 1 2 3
26 26 H 0.97003 * 119.99964 * 180.02562 * 7 6 4
27 27 H 0.96995 * 119.99956 * 95.27664 * 12 2 1
28 28 H 1.07999 * 120.03184 * 0.02562 * 14 13 12
29 29 H 1.08007 * 119.95210 * 180.02562 * 15 14 13
30 30 H 1.08003 * 119.96429 * 179.97438 * 20 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2305
5 1 2.6533 -1.5884 -1.1313
6 6 1.6994 -0.2393 -2.4827
7 7 0.9437 0.8304 -2.6034
8 14 2.3226 -1.1194 -4.0079
9 1 1.3450 -2.1613 -4.4124
10 1 2.4874 -0.1400 -5.1120
11 1 3.6310 -1.7564 -3.7120
12 7 2.0183 -0.6906 1.1962
13 6 2.1517 0.0066 2.4000
14 6 1.8214 1.3540 2.4644
15 6 1.9549 2.0402 3.6555
16 6 2.4174 1.3877 4.7837
17 7 2.5584 2.1268 6.0582
18 8 2.2668 3.3081 6.1127
19 8 2.9652 1.5534 7.0529
20 6 2.7484 0.0466 4.7237
21 6 2.6124 -0.6477 3.5365
22 17 3.0206 -2.3334 3.4636
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3634 0.5138 0.8899
26 1 0.7091 1.1616 -3.4844
27 1 2.2528 -1.6308 1.1516
28 1 1.4605 1.8647 1.5838
29 1 1.6977 3.0880 3.7059
30 1 3.1097 -0.4598 5.6065
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000195153035.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:05:15
Heat of formation + Delta-G solvation = 5.484872 kcal
Electronic energy + Delta-G solvation = -17879.826752 eV
Core-core repulsion = 14703.833405 eV
Total energy + Delta-G solvation = -3175.993346 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.82991 -39.60637 -36.52546 -36.23872 -36.21982 -33.25997 -31.05395 -30.68499
-28.60094 -25.77763 -25.18304 -23.29166 -22.07925 -20.54540 -19.12645 -18.47142
-17.70527 -17.21419 -16.41442 -15.80133 -15.17678 -14.85117 -14.18725 -13.99937
-13.69305 -13.22937 -12.76979 -12.38187 -11.72530 -11.62585 -11.47239 -11.30539
-11.27035 -11.16895 -11.02419 -10.88675 -10.79240 -10.62139 -10.44691 -10.09918
-9.41875 -9.09481 -8.78275 -7.40847 -6.43107 -4.53354 0.25169 1.03976
1.66864 1.72653 2.18977 3.08008 3.16199 3.17678 3.46558 3.67051
4.14397 4.55681 4.79372 4.91022 4.99944 5.09207 5.55292 5.64532
5.88247 6.00110 6.29900 6.33688 6.55596 6.62207 6.71809 6.92583
7.34512 7.42213 7.58843 7.78689 7.97997 8.08140 8.51114 9.15478
10.62947
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.026869 B = 0.004861 C = 0.004288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1041.829572 B = 5758.817046 C = 6528.022805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.256 3.744
3 H 0.050 0.950
4 C -0.540 4.540
5 H 0.064 0.936
6 C 0.071 3.929
7 N -0.883 5.883
8 Si 0.906 3.094
9 H -0.277 1.277
10 H -0.283 1.283
11 H -0.272 1.272
12 N -0.680 5.680
13 C 0.292 3.708
14 C -0.192 4.192
15 C 0.002 3.998
16 C -0.127 4.127
17 N 0.052 4.948
18 O -0.186 6.186
19 O -0.192 6.192
20 C 0.009 3.991
21 C -0.139 4.139
22 Cl -0.056 7.056
23 H 0.097 0.903
24 H 0.034 0.966
25 H 0.017 0.983
26 H 0.268 0.732
27 H 0.402 0.598
28 H 0.159 0.841
29 H 0.151 0.849
30 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.313 -1.699 8.211 8.487
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.154 3.846
3 H 0.068 0.932
4 C -0.578 4.578
5 H 0.082 0.918
6 C -0.133 4.133
7 N -0.519 5.519
8 Si 0.733 3.267
9 H -0.203 1.203
10 H -0.208 1.208
11 H -0.197 1.197
12 N -0.295 5.295
13 C 0.172 3.828
14 C -0.215 4.215
15 C -0.019 4.019
16 C -0.215 4.215
17 N 0.563 4.437
18 O -0.396 6.396
19 O -0.401 6.401
20 C -0.012 4.012
21 C -0.172 4.172
22 Cl -0.027 7.027
23 H 0.116 0.884
24 H 0.053 0.947
25 H 0.036 0.964
26 H 0.078 0.922
27 H 0.239 0.761
28 H 0.176 0.824
29 H 0.168 0.832
30 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 1.111 -2.006 7.186 7.543
hybrid contribution 0.446 -0.813 -0.554 1.081
sum 1.557 -2.820 6.631 7.372
Atomic orbital electron populations
1.22221 0.97600 1.00283 1.01284 1.19128 0.91499 0.93846 0.80089
0.93203 1.21085 1.33179 1.13752 0.89820 0.91785 1.24852 0.94443
0.94843 0.99192 1.69842 1.35403 1.22191 1.24512 0.86366 0.79332
0.79336 0.81713 1.20326 1.20819 1.19703 1.46355 1.62709 1.13221
1.07260 1.18138 0.87103 0.91552 0.86052 1.20777 1.09477 0.92317
0.98968 1.20761 0.90913 1.00823 0.89435 1.20359 1.22628 0.93317
0.85232 1.43406 0.97067 1.00759 1.02481 1.94489 1.54023 0.99390
1.91747 1.94486 1.48909 1.70560 1.26156 1.20356 0.92453 0.91039
0.97359 1.19926 1.15896 0.87167 0.94239 1.98351 1.92673 1.13400
1.98314 0.88430 0.94673 0.96417 0.92166 0.76115 0.82376 0.83151
0.82984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.18 9.21 37.16 0.34 -2.84 16
2 C 0.26 5.34 2.25 -69.08 -0.16 5.19 16
3 H 0.05 1.11 6.49 -51.93 -0.34 0.77 16
4 C -0.54 -12.74 8.73 -34.44 -0.30 -13.04 16
5 H 0.06 1.49 7.73 -52.49 -0.41 1.09 16
6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16
7 N -0.88 -22.02 11.32 55.43 0.63 -21.39 16
8 Si 0.91 19.07 29.54 -169.99 -5.02 14.04 16
9 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16
10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
12 N -0.68 -12.05 5.20 -53.25 -0.28 -12.32 16
13 C 0.29 4.67 6.64 -83.73 -0.56 4.11 16
14 C -0.19 -2.90 8.85 -39.39 -0.35 -3.24 16
15 C 0.00 0.02 9.55 -39.61 -0.38 -0.36 16
16 C -0.13 -1.90 6.85 -79.92 -0.55 -2.45 16
17 N 0.05 0.85 4.45 33.98 0.15 1.00 16
18 O -0.19 -3.11 18.44 -29.46 -0.54 -3.65 16
19 O -0.19 -3.20 18.44 -29.46 -0.54 -3.75 16
20 C 0.01 0.12 9.33 -39.58 -0.37 -0.24 16
21 C -0.14 -2.03 6.34 -39.31 -0.25 -2.28 16
22 Cl -0.06 -0.75 27.60 -51.86 -1.43 -2.18 16
23 H 0.10 2.22 6.07 -51.93 -0.32 1.91 16
24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
25 H 0.02 0.32 7.71 -51.93 -0.40 -0.09 16
26 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16
27 H 0.40 6.89 7.21 -40.82 -0.29 6.59 16
28 H 0.16 2.43 6.12 -52.49 -0.32 2.11 16
29 H 0.15 1.84 7.60 -52.48 -0.40 1.44 16
30 H 0.15 1.91 7.60 -52.48 -0.40 1.52 16
LS Contribution 282.34 15.07 4.25 4.25
Total: -1.00 -24.27 282.34 -7.87 -32.14
By element:
Atomic # 1 Polarization: 7.82 SS G_CDS: -2.43 Total: 5.39 kcal
Atomic # 6 Polarization: -10.88 SS G_CDS: -2.66 Total: -13.54 kcal
Atomic # 7 Polarization: -33.21 SS G_CDS: 0.50 Total: -32.71 kcal
Atomic # 8 Polarization: -6.31 SS G_CDS: -1.09 Total: -7.40 kcal
Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal
Atomic # 17 Polarization: -0.75 SS G_CDS: -1.43 Total: -2.18 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -24.27 -7.87 -32.14 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195153035.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.621 kcal
(2) G-P(sol) polarization free energy of solvation -24.268 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.136 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds