Wall clock time and date at job start Mon Mar 30 2020 01:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.50700 * 109.47154 * 240.00273 * 2 1 3 5 5 H 1.07994 * 119.99433 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00247 * 60.00137 * 4 2 1 7 7 N 1.31521 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47098 * 89.99905 * 8 6 4 10 10 H 1.48495 * 109.47406 * 209.99928 * 8 6 4 11 11 H 1.48500 * 109.47264 * 330.00179 * 8 6 4 12 12 N 1.46499 * 109.46896 * 120.00049 * 2 1 3 13 13 C 1.39755 * 119.99867 * 275.00103 * 12 2 1 14 14 C 1.38883 * 120.07913 * 0.02562 * 13 12 2 15 15 C 1.38111 * 119.93490 * 180.02562 * 14 13 12 16 16 C 1.38298 * 120.09796 * 0.02562 * 15 14 13 17 17 N 1.48007 * 119.91990 * 180.02562 * 16 15 14 18 18 O 1.21790 * 120.00190 * 0.02562 * 17 16 15 19 19 O 1.21804 * 119.99631 * 179.97438 * 17 16 15 20 20 C 1.38267 * 120.15159 * 0.02562 * 16 15 14 21 21 C 1.38206 * 120.06713 * 359.71967 * 20 16 15 22 22 Cl 1.73597 * 120.05148 * 180.30294 * 21 20 16 23 23 H 1.09005 * 109.46664 * 59.99747 * 1 2 3 24 24 H 1.08995 * 109.46863 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47413 * 300.00100 * 1 2 3 26 26 H 0.97003 * 119.99964 * 180.02562 * 7 6 4 27 27 H 0.96995 * 119.99956 * 95.27664 * 12 2 1 28 28 H 1.07999 * 120.03184 * 0.02562 * 14 13 12 29 29 H 1.08007 * 119.95210 * 180.02562 * 15 14 13 30 30 H 1.08003 * 119.96429 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9437 0.8304 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.3450 -2.1613 -4.4124 10 1 2.4874 -0.1400 -5.1120 11 1 3.6310 -1.7564 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 2.1517 0.0066 2.4000 14 6 1.8214 1.3540 2.4644 15 6 1.9549 2.0402 3.6555 16 6 2.4174 1.3877 4.7837 17 7 2.5584 2.1268 6.0582 18 8 2.2668 3.3081 6.1127 19 8 2.9652 1.5534 7.0529 20 6 2.7484 0.0466 4.7237 21 6 2.6124 -0.6477 3.5365 22 17 3.0206 -2.3334 3.4636 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7091 1.1616 -3.4844 27 1 2.2528 -1.6308 1.1516 28 1 1.4605 1.8647 1.5838 29 1 1.6977 3.0880 3.7059 30 1 3.1097 -0.4598 5.6065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195153035.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:14 Heat of formation + Delta-G solvation = -5.376454 kcal Electronic energy + Delta-G solvation = -17880.297734 eV Core-core repulsion = 14703.833405 eV Total energy + Delta-G solvation = -3176.464329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.10071 -40.85572 -37.74747 -37.59113 -37.51153 -34.90552 -32.33733 -32.07721 -30.04210 -27.44193 -26.61081 -24.54471 -23.39896 -22.04617 -20.36078 -19.78489 -19.14995 -18.48395 -17.92326 -17.32187 -16.49888 -16.28138 -15.49918 -15.25842 -15.08961 -14.47877 -14.34264 -13.91712 -13.19999 -13.02573 -12.83814 -12.78673 -12.65639 -12.57481 -12.36956 -12.29645 -12.19359 -12.16642 -11.96630 -11.54101 -11.12986 -10.58583 -10.24903 -8.75237 -8.24727 -6.39575 -1.01689 -0.12376 0.44085 0.46607 1.02070 1.41458 1.44979 1.52399 2.23531 2.26760 2.47457 3.07541 3.38544 3.65885 3.79705 3.87797 4.33507 4.47391 4.64582 4.72127 4.82685 4.91511 4.98183 5.12085 5.29206 5.47094 5.56653 5.76143 5.97323 6.16778 6.55033 6.66879 6.78495 7.31878 8.80117 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.004861 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.829572 B = 5758.817046 C = 6528.022805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.265 3.735 3 H 0.034 0.966 4 C -0.552 4.552 5 H 0.062 0.938 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.283 3.717 14 C -0.195 4.195 15 C 0.012 3.988 16 C -0.129 4.129 17 N 0.051 4.949 18 O -0.194 6.194 19 O -0.197 6.197 20 C 0.015 3.985 21 C -0.135 4.135 22 Cl -0.043 7.043 23 H 0.073 0.927 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.268 0.732 27 H 0.405 0.595 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 -2.147 8.894 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.052 0.948 4 C -0.591 4.591 5 H 0.080 0.920 6 C -0.173 4.173 7 N -0.544 5.544 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.305 5.305 13 C 0.165 3.835 14 C -0.219 4.219 15 C -0.009 4.009 16 C -0.217 4.217 17 N 0.560 4.440 18 O -0.404 6.404 19 O -0.406 6.406 20 C -0.006 4.006 21 C -0.168 4.168 22 Cl -0.015 7.015 23 H 0.092 0.908 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.241 0.759 28 H 0.172 0.828 29 H 0.187 0.813 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.499 -2.448 7.912 8.416 hybrid contribution 0.353 -0.669 -0.661 1.004 sum 1.852 -3.117 7.251 8.107 Atomic orbital electron populations 1.22048 0.97473 0.99855 1.00921 1.18770 0.91495 0.92935 0.80590 0.94786 1.21421 1.32872 1.13715 0.91049 0.91991 1.25511 0.94764 0.95476 1.01534 1.69943 1.36365 1.23232 1.24832 0.85531 0.78783 0.78288 0.78905 1.20143 1.20946 1.19531 1.45985 1.64245 1.13226 1.07052 1.18285 0.87525 0.91899 0.85820 1.20771 1.09725 0.92155 0.99225 1.20905 0.89756 1.01614 0.88606 1.20502 1.22687 0.93653 0.84848 1.43556 0.96882 1.00754 1.02760 1.94489 1.54305 0.99673 1.91896 1.94482 1.49058 1.70513 1.26562 1.20513 0.91664 0.90712 0.97685 1.19919 1.15233 0.87852 0.93794 1.98360 1.92524 1.12302 1.98269 0.90831 0.95015 0.94631 0.92295 0.75862 0.82787 0.81318 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.21 71.98 0.66 -5.22 16 2 C 0.26 11.02 2.25 44.25 0.10 11.12 16 3 H 0.03 1.53 6.49 -2.39 -0.02 1.52 16 4 C -0.55 -25.96 8.73 25.60 0.22 -25.74 16 5 H 0.06 2.87 7.73 -2.91 -0.02 2.84 16 6 C 0.03 1.39 5.30 84.65 0.45 1.83 16 7 N -0.91 -45.48 11.32 21.45 0.24 -45.24 16 8 Si 0.96 38.87 29.54 68.60 2.03 40.89 16 9 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.69 -23.80 5.20 -322.39 -1.68 -25.47 16 13 C 0.28 8.64 6.64 38.21 0.25 8.90 16 14 C -0.20 -5.63 8.85 22.39 0.20 -5.43 16 15 C 0.01 0.31 9.55 22.25 0.21 0.52 16 16 C -0.13 -3.57 6.85 36.40 0.25 -3.32 16 17 N 0.05 1.57 4.45 -46.42 -0.21 1.36 16 18 O -0.19 -6.15 18.44 18.90 0.35 -5.80 16 19 O -0.20 -6.20 18.44 18.88 0.35 -5.85 16 20 C 0.02 0.39 9.33 22.27 0.21 0.59 16 21 C -0.14 -3.67 6.34 22.44 0.14 -3.53 16 22 Cl -0.04 -1.07 27.60 -2.72 -0.08 -1.15 16 23 H 0.07 3.38 6.07 -2.38 -0.01 3.37 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.03 1.27 7.71 -2.39 -0.02 1.25 16 26 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 27 H 0.40 13.48 7.21 -92.71 -0.67 12.81 16 28 H 0.15 4.63 6.12 -2.91 -0.02 4.61 16 29 H 0.17 3.76 7.60 -2.91 -0.02 3.73 16 30 H 0.17 3.78 7.60 -2.91 -0.02 3.76 16 Total: -1.00 -49.65 282.34 4.24 -45.41 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.53 Total: 16.12 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 2.70 Total: -20.28 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.64 Total: -69.35 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.70 Total: -11.65 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -49.65 4.24 -45.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195153035.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.038 kcal (2) G-P(sol) polarization free energy of solvation -49.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds