Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36002 * 116.99815 * 2 1 4 4 C 1.38690 * 119.99305 * 359.72729 * 3 2 1 5 5 C 1.38099 * 120.03290 * 180.27523 * 4 3 2 6 6 C 1.38857 * 120.00128 * 359.97438 * 5 4 3 7 7 N 1.40105 * 120.01258 * 180.02562 * 6 5 4 8 8 C 1.34770 * 120.00455 * 213.27138 * 7 6 5 9 9 O 1.21589 * 120.00199 * 5.31022 * 8 7 6 10 10 N 1.34780 * 120.00250 * 185.31683 * 8 7 6 11 11 C 1.37164 * 120.00284 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99612 * 0.02562 * 11 10 8 13 13 C 1.38880 * 119.99747 * 179.97438 * 11 10 8 14 14 N 1.31470 * 120.00183 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99469 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47342 * 60.00087 * 15 13 11 17 17 H 1.48506 * 109.46902 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46989 * 299.99699 * 15 13 11 19 19 C 1.38837 * 119.98148 * 0.02562 * 6 5 4 20 20 C 1.38198 * 119.96770 * 0.02562 * 19 6 5 21 21 Cl 1.73604 * 119.99904 * 179.97438 * 20 19 6 22 22 H 1.09006 * 109.46965 * 299.99724 * 1 2 3 23 23 H 1.09000 * 109.47337 * 59.99733 * 1 2 3 24 24 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.97845 * 0.27315 * 4 3 2 26 26 H 1.07994 * 119.99860 * 179.97438 * 5 4 3 27 27 H 0.97007 * 119.99055 * 33.27079 * 7 6 5 28 28 H 0.97007 * 119.99668 * 0.02562 * 10 8 7 29 29 H 0.97004 * 119.99631 * 180.02562 * 14 13 11 30 30 H 1.08000 * 120.01206 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3748 -0.0057 5 6 1.9169 3.6057 -0.0115 6 6 3.3035 3.6794 -0.0110 7 7 3.9389 4.9281 -0.0163 8 6 5.1146 5.0833 -0.6566 9 8 5.5764 4.1679 -1.3101 10 7 5.7785 6.2532 -0.5724 11 6 6.9754 6.4110 -1.2236 12 1 7.3854 5.5979 -1.8042 13 6 7.6592 7.6167 -1.1373 14 7 7.1596 8.6066 -0.4309 15 14 9.2888 7.8317 -2.0248 16 1 9.0877 7.6370 -3.4831 17 1 9.8118 9.1990 -1.7749 18 1 10.2626 6.8301 -1.5212 19 6 4.0601 2.5154 -0.0053 20 6 3.4325 1.2841 -0.0006 21 17 4.3779 -0.1719 0.0059 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.2123 2.3178 -0.0057 26 1 1.3280 4.5110 -0.0163 27 1 3.5325 5.6809 0.4410 28 1 5.4103 6.9834 -0.0506 29 1 7.6371 9.4489 -0.3710 30 1 5.1386 2.5721 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217263955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = -41.507578 kcal Electronic energy + Delta-G solvation = -17705.507841 eV Core-core repulsion = 14527.476750 eV Total energy + Delta-G solvation = -3178.031092 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27621 -39.11061 -37.21095 -36.18494 -34.22357 -33.49844 -31.28508 -30.73215 -28.84237 -27.11784 -24.84663 -22.74798 -22.07198 -20.03253 -18.22422 -18.11685 -17.65796 -16.54671 -15.98966 -15.77798 -14.70536 -14.65027 -14.36248 -13.90083 -13.74532 -13.48362 -13.14207 -12.95474 -12.76255 -12.03739 -11.55778 -11.45980 -11.36510 -11.08980 -11.00464 -10.65446 -10.45611 -10.24449 -9.74258 -9.37418 -9.03719 -8.57524 -8.06836 -7.40312 -6.42539 -3.84638 1.30168 1.50432 2.38817 3.21123 3.22484 3.26058 3.29278 3.59155 3.72757 4.25040 4.27409 4.79702 4.90410 5.03691 5.12276 5.29353 5.33159 5.35503 5.59234 5.62434 5.93900 5.99912 6.23746 6.47583 6.65074 7.20601 7.41559 7.44290 7.56304 8.24083 8.61410 9.12865 9.50617 9.98539 10.76094 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.035405 B = 0.004149 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.654082 B = 6746.339820 C = 7397.104440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.098 3.902 4 C -0.175 4.175 5 C -0.121 4.121 6 C 0.175 3.825 7 N -0.695 5.695 8 C 0.643 3.357 9 O -0.608 6.608 10 N -0.573 5.573 11 C -0.290 4.290 12 H 0.105 0.895 13 C 0.021 3.979 14 N -0.907 5.907 15 Si 0.934 3.066 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.079 4.079 20 C -0.043 4.043 21 Cl -0.063 7.063 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.400 0.600 28 H 0.393 0.607 29 H 0.272 0.728 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 -10.340 3.730 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.052 3.948 4 C -0.195 4.195 5 C -0.143 4.143 6 C 0.077 3.923 7 N -0.342 5.342 8 C 0.344 3.656 9 O -0.490 6.490 10 N -0.212 5.212 11 C -0.420 4.420 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.548 5.548 15 Si 0.761 3.239 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.101 4.101 20 C -0.070 4.070 21 Cl -0.034 7.034 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.152 0.848 26 H 0.149 0.851 27 H 0.235 0.765 28 H 0.226 0.774 29 H 0.081 0.919 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.811 -11.158 3.164 17.281 hybrid contribution 0.178 1.117 0.060 1.133 sum -12.633 -10.041 3.223 16.456 Atomic orbital electron populations 1.23018 0.78808 1.03682 1.01189 1.86143 1.20880 1.26120 1.89188 1.18517 0.90314 0.84940 1.01073 1.20822 0.99614 0.91060 1.07979 1.20721 0.92598 0.97807 1.03193 1.17254 0.90425 0.85235 0.99402 1.42723 1.23733 1.09968 1.57801 1.15887 0.80927 0.85309 0.83428 1.90774 1.68948 1.41498 1.47825 1.41016 1.20766 1.11232 1.48193 1.19563 0.95392 0.99758 1.27274 0.87762 1.25210 0.99994 0.95071 0.97743 1.69625 1.40022 1.04312 1.40852 0.85869 0.81207 0.77229 0.79624 1.19914 1.21002 1.19879 1.21077 1.02205 0.88311 0.98496 1.19944 0.88275 0.88477 1.10349 1.98342 1.72115 1.35862 1.97089 0.92799 0.92758 0.88466 0.84754 0.85119 0.76496 0.77377 0.91864 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.01 9.95 -19.75 -0.20 -4.21 16 3 C 0.10 1.42 6.68 -39.20 -0.26 1.15 16 4 C -0.18 -2.17 9.03 -39.47 -0.36 -2.53 16 5 C -0.12 -1.63 9.96 -39.40 -0.39 -2.02 16 6 C 0.18 2.98 6.28 -83.62 -0.53 2.45 16 7 N -0.69 -12.52 5.35 -14.19 -0.08 -12.59 16 8 C 0.64 15.04 8.25 -86.92 -0.72 14.32 16 9 O -0.61 -16.25 13.60 5.29 0.07 -16.18 16 10 N -0.57 -14.18 5.29 -15.35 -0.08 -14.26 16 11 C -0.29 -7.96 9.68 -14.93 -0.14 -8.10 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 14 N -0.91 -24.33 13.05 55.49 0.72 -23.61 16 15 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.08 -1.45 8.43 -39.37 -0.33 -1.79 16 20 C -0.04 -0.71 6.33 -39.38 -0.25 -0.96 16 21 Cl -0.06 -1.00 28.50 -51.86 -1.48 -2.48 16 22 H 0.05 0.36 7.67 -51.93 -0.40 -0.03 16 23 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.13 1.21 6.29 -52.48 -0.33 0.88 16 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.40 5.84 8.84 -40.82 -0.36 5.48 16 28 H 0.39 9.20 7.92 -40.82 -0.32 8.87 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.16 3.28 6.41 -52.49 -0.34 2.95 16 LS Contribution 283.02 15.07 4.26 4.26 Total: -1.00 -31.31 283.02 -6.38 -37.69 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -2.50 Total: 11.27 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.08 Total: 4.21 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.57 Total: -50.46 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.12 Total: -20.39 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.48 Total: -2.48 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.31 -6.38 -37.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.817 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds