Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36002 * 116.99815 * 2 1 4 4 C 1.38690 * 119.99305 * 359.72729 * 3 2 1 5 5 C 1.38099 * 120.03290 * 180.27523 * 4 3 2 6 6 C 1.38857 * 120.00128 * 359.97438 * 5 4 3 7 7 N 1.40105 * 120.01258 * 180.02562 * 6 5 4 8 8 C 1.34770 * 120.00455 * 213.27138 * 7 6 5 9 9 O 1.21589 * 120.00199 * 5.31022 * 8 7 6 10 10 N 1.34780 * 120.00250 * 185.31683 * 8 7 6 11 11 C 1.37164 * 120.00284 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99612 * 0.02562 * 11 10 8 13 13 C 1.38880 * 119.99747 * 179.97438 * 11 10 8 14 14 N 1.31470 * 120.00183 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99469 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47342 * 60.00087 * 15 13 11 17 17 H 1.48506 * 109.46902 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46989 * 299.99699 * 15 13 11 19 19 C 1.38837 * 119.98148 * 0.02562 * 6 5 4 20 20 C 1.38198 * 119.96770 * 0.02562 * 19 6 5 21 21 Cl 1.73604 * 119.99904 * 179.97438 * 20 19 6 22 22 H 1.09006 * 109.46965 * 299.99724 * 1 2 3 23 23 H 1.09000 * 109.47337 * 59.99733 * 1 2 3 24 24 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.97845 * 0.27315 * 4 3 2 26 26 H 1.07994 * 119.99860 * 179.97438 * 5 4 3 27 27 H 0.97007 * 119.99055 * 33.27079 * 7 6 5 28 28 H 0.97007 * 119.99668 * 0.02562 * 10 8 7 29 29 H 0.97004 * 119.99631 * 180.02562 * 14 13 11 30 30 H 1.08000 * 120.01206 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3748 -0.0057 5 6 1.9169 3.6057 -0.0115 6 6 3.3035 3.6794 -0.0110 7 7 3.9389 4.9281 -0.0163 8 6 5.1146 5.0833 -0.6566 9 8 5.5764 4.1679 -1.3101 10 7 5.7785 6.2532 -0.5724 11 6 6.9754 6.4110 -1.2236 12 1 7.3854 5.5979 -1.8042 13 6 7.6592 7.6167 -1.1373 14 7 7.1596 8.6066 -0.4309 15 14 9.2888 7.8317 -2.0248 16 1 9.0877 7.6370 -3.4831 17 1 9.8118 9.1990 -1.7749 18 1 10.2626 6.8301 -1.5212 19 6 4.0601 2.5154 -0.0053 20 6 3.4325 1.2841 -0.0006 21 17 4.3779 -0.1719 0.0059 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.2123 2.3178 -0.0057 26 1 1.3280 4.5110 -0.0163 27 1 3.5325 5.6809 0.4410 28 1 5.4103 6.9834 -0.0506 29 1 7.6371 9.4489 -0.3710 30 1 5.1386 2.5721 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217263955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = -63.552974 kcal Electronic energy + Delta-G solvation = -17706.463802 eV Core-core repulsion = 14527.476750 eV Total energy + Delta-G solvation = -3178.987052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57703 -40.54927 -38.48886 -37.44465 -36.07967 -35.10161 -33.22616 -31.89325 -30.02832 -28.04738 -26.71430 -23.94381 -23.39343 -21.65584 -20.06170 -19.42570 -19.07455 -18.01197 -17.19871 -16.67780 -16.58617 -16.05403 -15.87170 -15.41301 -15.10947 -14.89812 -14.65605 -14.19610 -13.84907 -13.46440 -13.05108 -12.96187 -12.63678 -12.42655 -12.25272 -12.10790 -12.04111 -11.86764 -11.56959 -10.96019 -10.74712 -10.05686 -9.83891 -8.66986 -8.43872 -5.92263 0.13140 0.29566 1.17078 1.43451 1.44489 1.53684 2.00231 2.22196 2.34867 2.47385 2.70189 3.28083 3.77752 3.88192 3.99852 4.21482 4.40028 4.48151 4.50629 4.66322 4.80808 4.83733 5.15068 5.22188 5.37610 5.42975 5.75257 5.90600 6.37808 6.38870 6.76981 7.12278 7.63363 8.10903 8.74578 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.035405 B = 0.004149 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.654082 B = 6746.339820 C = 7397.104440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.108 3.892 4 C -0.161 4.161 5 C -0.099 4.099 6 C 0.142 3.858 7 N -0.678 5.678 8 C 0.648 3.352 9 O -0.647 6.647 10 N -0.582 5.582 11 C -0.321 4.321 12 H 0.081 0.919 13 C -0.014 4.014 14 N -0.925 5.925 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.273 1.273 19 C -0.102 4.102 20 C -0.065 4.065 21 Cl -0.069 7.069 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.181 0.819 26 H 0.168 0.832 27 H 0.418 0.582 28 H 0.397 0.603 29 H 0.276 0.724 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.174 -10.245 3.902 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.060 3.940 4 C -0.180 4.180 5 C -0.120 4.120 6 C 0.045 3.955 7 N -0.328 5.328 8 C 0.349 3.651 9 O -0.531 6.531 10 N -0.223 5.223 11 C -0.450 4.450 12 H 0.099 0.901 13 C -0.213 4.213 14 N -0.566 5.566 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.198 1.198 19 C -0.124 4.124 20 C -0.093 4.093 21 Cl -0.040 7.040 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.135 0.865 25 H 0.198 0.802 26 H 0.186 0.814 27 H 0.256 0.744 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.451 -11.075 3.372 19.307 hybrid contribution 0.771 0.917 0.046 1.199 sum -14.681 -10.158 3.418 18.177 Atomic orbital electron populations 1.23432 0.75938 1.05759 1.02777 1.86144 1.23799 1.25398 1.88655 1.18655 0.89592 0.86433 0.99282 1.21310 1.01632 0.89534 1.05560 1.21097 0.90827 0.99856 1.00173 1.17529 0.91977 0.83967 1.01977 1.42326 1.22086 1.11287 1.57074 1.16085 0.81863 0.84240 0.82920 1.90744 1.70384 1.42575 1.49438 1.40929 1.20647 1.11895 1.48799 1.19523 0.97077 0.99875 1.28565 0.90076 1.25956 1.02830 0.94366 0.98140 1.69688 1.41103 1.04570 1.41271 0.84971 0.77261 0.77581 0.78411 1.19722 1.19576 1.19838 1.20816 1.00638 0.90088 1.00836 1.20028 0.89588 0.87708 1.11936 1.98326 1.72583 1.35922 1.97194 0.90868 0.91277 0.86473 0.80223 0.81414 0.74422 0.76826 0.91430 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.56 9.95 -93.58 -0.93 -8.49 16 3 C 0.11 2.86 6.68 22.51 0.15 3.01 16 4 C -0.16 -3.31 9.03 22.34 0.20 -3.11 16 5 C -0.10 -2.31 9.96 22.38 0.22 -2.08 16 6 C 0.14 4.74 6.28 38.11 0.24 4.98 16 7 N -0.68 -24.43 5.35 -317.08 -1.70 -26.12 16 8 C 0.65 31.29 8.25 179.06 1.48 32.77 16 9 O -0.65 -36.31 13.60 -4.00 -0.05 -36.36 16 10 N -0.58 -29.68 5.29 -320.72 -1.70 -31.38 16 11 C -0.32 -18.14 9.68 84.01 0.81 -17.33 16 12 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 13 C -0.01 -0.73 5.50 84.90 0.47 -0.26 16 14 N -0.93 -49.64 13.05 21.65 0.28 -49.35 16 15 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C -0.10 -3.87 8.43 22.40 0.19 -3.68 16 20 C -0.06 -2.16 6.33 22.40 0.14 -2.01 16 21 Cl -0.07 -2.25 28.50 -2.72 -0.08 -2.32 16 22 H 0.07 0.62 7.67 -2.38 -0.02 0.60 16 23 H 0.07 0.64 7.65 -2.39 -0.02 0.63 16 24 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.18 2.08 6.29 -2.91 -0.02 2.06 16 26 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.42 11.79 8.84 -92.70 -0.82 10.97 16 28 H 0.40 18.99 7.92 -92.70 -0.73 18.26 16 29 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.12 5.35 6.41 -2.91 -0.02 5.33 16 Total: -1.00 -70.75 283.02 2.53 -68.23 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.34 Total: 27.17 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.02 Total: 13.57 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -3.11 Total: -106.85 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.99 Total: -44.85 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.32 kcal Total: -70.75 2.53 -68.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.672 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds