Wall clock time and date at job start Mon Mar 30 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48495 * 109.46984 * 269.99503 * 3 2 1 5 5 H 1.48503 * 109.46905 * 29.99426 * 3 2 1 6 6 H 1.48497 * 109.46892 * 149.99439 * 3 2 1 7 7 C 1.37879 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46764 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.39742 * 119.99935 * 180.02562 * 11 10 9 13 13 C 1.38915 * 120.06240 * 354.12707 * 12 11 10 14 14 C 1.38089 * 119.94020 * 179.97438 * 13 12 11 15 15 C 1.38402 * 120.06183 * 359.97438 * 14 13 12 16 16 Cl 1.73595 * 119.93973 * 179.97438 * 15 14 13 17 17 C 1.38361 * 120.12428 * 0.02562 * 15 14 13 18 18 C 1.38137 * 120.06054 * 359.75239 * 17 15 14 19 19 N 1.47996 * 120.03267 * 180.25357 * 18 17 15 20 20 O 1.21804 * 120.00367 * 142.57164 * 19 18 17 21 21 O 1.21803 * 120.00232 * 322.57047 * 19 18 17 22 22 H 0.96998 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47536 * 59.99841 * 9 7 2 24 24 H 1.08995 * 109.47149 * 299.99060 * 9 7 2 25 25 H 1.09000 * 109.47392 * 299.99651 * 10 9 7 26 26 H 1.09000 * 109.46818 * 59.99899 * 10 9 7 27 27 H 0.97000 * 120.00469 * 0.02562 * 11 10 9 28 28 H 1.08001 * 120.03226 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.97072 * 179.97438 * 14 13 12 30 30 H 1.07996 * 119.97183 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9307 0.0012 12 6 2.2116 -6.1409 0.0018 13 6 3.5953 -6.1457 -0.1211 14 6 4.2832 -7.3430 -0.1197 15 6 3.5955 -8.5376 0.0047 16 17 4.4635 -10.0410 0.0055 17 6 2.2173 -8.5359 0.1273 18 6 1.5244 -7.3409 0.1311 19 7 0.0508 -7.3396 0.2679 20 8 -0.4996 -6.4701 0.9196 21 8 -0.6117 -8.2080 -0.2712 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6044 -0.8895 26 1 2.8720 -3.6042 0.8905 27 1 0.5429 -4.9308 0.0011 28 1 4.1325 -5.2138 -0.2178 29 1 5.3589 -7.3473 -0.2156 30 1 1.6832 -9.4695 0.2246 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273276930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:42 Heat of formation + Delta-G solvation = -10.029825 kcal Electronic energy + Delta-G solvation = -17653.218216 eV Core-core repulsion = 14476.552102 eV Total energy + Delta-G solvation = -3176.666114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.34491 -40.76895 -38.17112 -37.61210 -36.97464 -35.11388 -33.16586 -32.30767 -29.87346 -27.55966 -26.61147 -24.31040 -23.31206 -22.42034 -20.39112 -19.86041 -19.03027 -18.71266 -17.95291 -17.14867 -16.58426 -16.47400 -16.09485 -15.48227 -15.37205 -14.80376 -14.30666 -13.78661 -13.45769 -13.42250 -12.98442 -12.87451 -12.77378 -12.50878 -12.40486 -12.31404 -12.27242 -11.94975 -11.63673 -11.41767 -11.06034 -10.69579 -10.59966 -8.86509 -8.25029 -6.37746 -1.10192 -0.04382 0.07360 0.29647 1.06572 1.42827 1.43809 1.54804 2.04526 2.17862 2.42089 3.10566 3.21321 3.68979 3.72489 3.79426 4.22776 4.26475 4.40590 4.44561 4.74897 4.77602 4.87088 5.07908 5.21958 5.36906 5.48964 5.65797 5.86507 6.05482 6.22879 6.41350 6.78557 7.33135 8.87472 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.004105 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.284939 B = 6818.793237 C = 7849.870853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.015 3.985 10 C 0.134 3.866 11 N -0.721 5.721 12 C 0.273 3.727 13 C -0.182 4.182 14 C 0.006 3.994 15 C -0.097 4.097 16 Cl -0.043 7.043 17 C -0.006 4.006 18 C -0.138 4.138 19 N 0.042 4.958 20 O -0.219 6.219 21 O -0.153 6.153 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.003 1.003 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.402 0.598 28 H 0.172 0.828 29 H 0.186 0.814 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.966 -17.269 -0.648 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.022 4.022 10 C 0.012 3.988 11 N -0.345 5.345 12 C 0.159 3.841 13 C -0.205 4.205 14 C -0.014 4.014 15 C -0.127 4.127 16 Cl -0.014 7.014 17 C -0.026 4.026 18 C -0.228 4.228 19 N 0.554 4.446 20 O -0.419 6.419 21 O -0.375 6.375 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.015 0.985 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.239 0.761 28 H 0.189 0.811 29 H 0.204 0.796 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.640 -16.956 -0.638 21.158 hybrid contribution -1.279 0.835 0.076 1.529 sum 11.361 -16.121 -0.562 19.730 Atomic orbital electron populations 1.70114 1.08075 1.28035 1.51037 1.26014 0.95688 1.03673 0.94444 0.85359 0.78726 0.77968 0.78468 1.19815 1.21335 1.18040 1.21462 0.94030 0.91035 1.51358 0.90585 1.19149 0.94623 0.92858 0.95588 1.21676 0.95159 0.80107 1.01856 1.45886 1.09986 1.03759 1.74859 1.18035 0.93140 0.83756 0.89201 1.21028 0.89238 1.01245 1.08971 1.21544 1.02645 0.88380 0.88831 1.20316 0.90561 0.89219 1.12585 1.98387 1.75313 1.30407 1.97285 1.20543 0.93409 0.95964 0.92700 1.20380 0.77862 0.96251 1.28313 1.43711 1.04263 0.99146 0.97462 1.94555 1.74560 1.32430 1.40368 1.94472 1.65315 1.31345 1.46374 0.92695 0.98671 0.98503 0.90382 0.90641 0.76055 0.81098 0.79647 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.54 -28.30 9.11 25.60 0.23 -28.07 16 8 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.75 5.09 29.85 0.15 0.90 16 10 C 0.13 4.82 4.90 86.38 0.42 5.25 16 11 N -0.72 -24.59 5.51 -339.38 -1.87 -26.46 16 12 C 0.27 7.65 6.61 38.20 0.25 7.91 16 13 C -0.18 -3.68 9.32 22.40 0.21 -3.47 16 14 C 0.01 0.08 9.82 22.27 0.22 0.30 16 15 C -0.10 -1.69 6.32 22.34 0.14 -1.55 16 16 Cl -0.04 -0.64 28.95 -2.72 -0.08 -0.72 16 17 C -0.01 -0.13 9.44 22.28 0.21 0.08 16 18 C -0.14 -3.90 6.51 36.51 0.24 -3.66 16 19 N 0.04 1.43 4.29 -46.17 -0.20 1.23 16 20 O -0.22 -8.42 16.76 18.88 0.32 -8.10 16 21 O -0.15 -5.10 18.95 18.88 0.36 -4.74 16 22 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 23 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.08 2.52 7.73 -2.39 -0.02 2.50 16 26 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 27 H 0.40 15.38 6.09 -92.71 -0.56 14.82 16 28 H 0.17 2.96 6.73 -2.91 -0.02 2.94 16 29 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.16 3.08 8.01 -2.91 -0.02 3.06 16 Total: -1.00 -63.36 288.25 4.00 -59.36 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.62 Total: 12.34 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 2.54 Total: -21.83 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.78 Total: -80.21 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.67 Total: -12.85 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -63.36 4.00 -59.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273276930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.334 kcal (2) G-P(sol) polarization free energy of solvation -63.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds